Wall clock time and date at job start Mon Mar 30 2020 02:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99760 * 2 1 4 4 H 1.48504 * 109.46742 * 270.00009 * 3 2 1 5 5 H 1.48505 * 109.47198 * 29.99624 * 3 2 1 6 6 H 1.48498 * 109.47288 * 149.99970 * 3 2 1 7 7 C 1.37875 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99786 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00008 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.46888 * 179.97438 * 9 7 2 11 11 C 1.31874 * 119.13387 * 90.00439 * 10 9 7 12 12 C 1.38203 * 120.76322 * 179.97438 * 11 10 9 13 13 C 1.38651 * 119.16168 * 0.02562 * 12 11 10 14 14 C 1.38648 * 118.42097 * 359.95770 * 13 12 11 15 15 C 1.31869 * 119.13960 * 269.97581 * 10 9 7 16 16 H 0.96995 * 120.00461 * 359.97438 * 1 2 3 17 17 H 1.09002 * 109.46748 * 59.99974 * 9 7 2 18 18 H 1.08997 * 109.46967 * 299.99982 * 9 7 2 19 19 H 1.07996 * 119.61765 * 359.71678 * 11 10 9 20 20 H 1.08002 * 120.41636 * 179.97438 * 12 11 10 21 21 H 1.08006 * 120.78679 * 179.97438 * 13 12 11 22 22 H 1.08005 * 120.41449 * 180.02562 * 14 13 12 23 23 H 1.08000 * 119.61679 * 0.02562 * 15 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0000 10 7 3.9999 -2.5751 0.0013 11 6 4.2136 -3.1817 -1.1500 12 6 4.6746 -4.4840 -1.1880 13 6 4.9115 -5.1519 0.0037 14 6 4.6757 -4.4814 1.1941 15 6 4.2149 -3.1791 1.1537 16 1 -0.4850 0.8400 0.0004 17 1 3.8752 -0.6795 0.8895 18 1 3.8745 -0.6807 -0.8905 19 1 4.0222 -2.6561 -2.0738 20 1 4.8472 -4.9756 -2.1341 21 1 5.2715 -6.1702 0.0046 22 1 4.8498 -4.9707 2.1411 23 1 4.0285 -2.6499 2.0765 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003634186.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:40 Heat of formation + Delta-G solvation = 111.877832 kcal Electronic energy + Delta-G solvation = -8730.772009 eV Core-core repulsion = 7047.627934 eV Total energy + Delta-G solvation = -1683.144075 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 164.077 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -43.08046 -36.63884 -34.80173 -32.96410 -30.82600 -26.17121 -25.52018 -24.05311 -19.56237 -19.02205 -18.19268 -17.31545 -16.80215 -16.23393 -15.58101 -15.28672 -14.69175 -14.10707 -13.46063 -13.03279 -12.81928 -12.72519 -12.30792 -11.98546 -11.28862 -11.05507 -10.69929 -8.56498 -6.75656 -0.72550 -0.32464 1.16265 1.30783 1.33256 1.47071 2.08786 2.16489 2.80806 3.22634 3.41395 3.57648 3.67227 3.88879 4.33208 4.35924 4.50685 4.63151 4.84391 4.92971 4.95235 5.34169 5.51627 5.79997 6.37046 6.95094 8.56788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.034 3.966 3 Si 0.931 3.069 4 H -0.266 1.266 5 H -0.303 1.303 6 H -0.215 1.215 7 C -0.569 4.569 8 H 0.051 0.949 9 C 0.162 3.838 10 N -0.319 5.319 11 C 0.109 3.891 12 C -0.125 4.125 13 C -0.014 4.014 14 C -0.125 4.125 15 C 0.109 3.891 16 H 0.274 0.726 17 H 0.096 0.904 18 H 0.095 0.905 19 H 0.204 0.796 20 H 0.200 0.800 21 H 0.194 0.806 22 H 0.200 0.800 23 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.300 -12.604 0.070 20.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.169 4.169 3 Si 0.754 3.246 4 H -0.191 1.191 5 H -0.230 1.230 6 H -0.138 1.138 7 C -0.606 4.606 8 H 0.069 0.931 9 C 0.043 3.957 10 N 0.027 4.973 11 C -0.034 4.034 12 C -0.143 4.143 13 C -0.039 4.039 14 C -0.143 4.143 15 C -0.034 4.034 16 H 0.083 0.917 17 H 0.114 0.886 18 H 0.112 0.888 19 H 0.221 0.779 20 H 0.217 0.783 21 H 0.212 0.788 22 H 0.217 0.783 23 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 16.038 -12.205 0.072 20.155 hybrid contribution -0.696 1.106 -0.028 1.307 sum 15.343 -11.099 0.044 18.936 Atomic orbital electron populations 1.69961 1.08848 1.29301 1.48199 1.25660 0.95169 1.03138 0.92929 0.86000 0.80429 0.78552 0.79651 1.19134 1.22972 1.13753 1.21047 0.89468 0.94183 1.55918 0.93089 1.21224 0.94860 0.75138 1.04435 1.42806 1.32049 1.15663 1.06773 1.23454 0.92377 0.96028 0.91545 1.22422 0.97084 0.91649 1.03190 1.22774 0.87818 1.02328 0.91029 1.22422 0.97079 0.91635 1.03208 1.23448 0.92344 0.96070 0.91493 0.91693 0.88594 0.88762 0.77865 0.78325 0.78841 0.78312 0.77857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.24 13.96 21.45 0.30 -29.94 14 2 C 0.03 0.80 5.47 84.65 0.46 1.27 14 3 Si 0.93 13.79 27.47 68.60 1.88 15.67 14 4 H -0.27 -3.98 7.11 99.48 0.71 -3.27 14 5 H -0.30 -6.19 7.11 99.48 0.71 -5.48 14 6 H -0.22 -1.41 6.54 99.48 0.65 -0.76 14 7 C -0.57 -8.90 9.92 25.60 0.25 -8.64 14 8 H 0.05 1.14 8.06 -2.91 -0.02 1.12 14 9 C 0.16 -0.18 4.30 85.63 0.37 0.19 14 10 N -0.32 3.46 2.40 -530.13 -1.27 2.18 14 11 C 0.11 -1.73 10.19 84.68 0.86 -0.86 14 12 C -0.13 2.73 10.11 22.36 0.23 2.96 14 13 C -0.01 0.34 10.18 22.47 0.23 0.57 14 14 C -0.13 2.74 10.11 22.36 0.23 2.96 14 15 C 0.11 -1.74 10.19 84.68 0.86 -0.87 14 16 H 0.27 8.63 8.31 -92.71 -0.77 7.86 14 17 H 0.10 -0.36 7.00 -2.39 -0.02 -0.38 14 18 H 0.09 -0.39 7.38 -2.39 -0.02 -0.41 14 19 H 0.20 -3.70 7.96 -2.91 -0.02 -3.73 14 20 H 0.20 -5.37 8.06 -2.91 -0.02 -5.40 14 21 H 0.19 -5.66 8.06 -2.91 -0.02 -5.68 14 22 H 0.20 -5.38 8.06 -2.91 -0.02 -5.41 14 23 H 0.20 -3.71 7.96 -2.91 -0.02 -3.73 14 Total: 0.00 -45.32 205.89 5.52 -39.80 By element: Atomic # 1 Polarization: -26.40 SS G_CDS: 1.12 Total: -25.28 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 3.49 Total: -2.44 kcal Atomic # 7 Polarization: -26.78 SS G_CDS: -0.97 Total: -27.75 kcal Atomic # 14 Polarization: 13.79 SS G_CDS: 1.88 Total: 15.67 kcal Total: -45.32 5.52 -39.80 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003634186.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.673 kcal (2) G-P(sol) polarization free energy of solvation -45.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds