Wall clock time and date at job start Mon Mar 30 2020 01:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 O 1.43752 * 109.63063 * 294.36548 * 10 9 7 12 12 C 1.44787 * 104.81437 * 215.80244 * 11 10 9 13 13 C 1.54921 * 101.71901 * 36.10551 * 12 11 10 14 14 O 1.43369 * 109.63452 * 175.00116 * 10 9 7 15 15 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 16 16 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 17 17 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 18 18 H 1.09000 * 109.62777 * 54.60768 * 10 9 7 19 19 H 1.08997 * 110.97833 * 277.99771 * 12 11 10 20 20 H 1.09004 * 111.01028 * 154.22220 * 12 11 10 21 21 H 1.08996 * 110.69435 * 206.03656 * 13 12 11 22 22 H 1.08997 * 110.84147 * 82.90276 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6621 0.0166 11 8 2.9837 -3.6716 -1.2167 12 6 3.1821 -5.0737 -1.5186 13 6 1.8515 -5.6936 -1.0232 14 8 1.5358 -4.9018 0.1397 15 1 -0.4850 0.8401 -0.0041 16 1 0.6241 -2.5528 0.9015 17 1 0.6247 -2.5609 -0.8785 18 1 2.9351 -3.5503 0.8531 19 1 4.0301 -5.4760 -0.9645 20 1 3.3096 -5.2285 -2.5900 21 1 1.9918 -6.7395 -0.7507 22 1 1.0726 -5.5951 -1.7793 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005190691.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:50 Heat of formation + Delta-G solvation = -98.650688 kcal Electronic energy + Delta-G solvation = -8787.380087 eV Core-core repulsion = 6921.502498 eV Total energy + Delta-G solvation = -1865.877589 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 158.073 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -39.52011 -34.24513 -33.17524 -30.50218 -27.85683 -24.06306 -22.69760 -20.78360 -17.04830 -16.01645 -15.75066 -15.08991 -14.42043 -13.87467 -13.04807 -12.43805 -11.99739 -11.67989 -11.43263 -11.02929 -10.75412 -10.45579 -10.00005 -9.68081 -9.18669 -8.57935 -8.34770 -5.98430 -4.00138 3.35852 3.40893 3.45190 4.10409 4.49017 4.85598 5.04268 5.27117 5.38791 5.48975 5.78446 5.95794 6.15238 6.41042 6.72062 7.45405 7.70574 7.89784 8.04128 8.39645 9.04306 9.62346 11.13565 Molecular weight = 158.07amu Principal moments of inertia in cm(-1) A = 0.105018 B = 0.014655 C = 0.013504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 266.557028 B = 1910.119054 C = 2072.901462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.233 3.767 11 O -0.364 6.364 12 C 0.010 3.990 13 C 0.022 3.978 14 O -0.396 6.396 15 H 0.261 0.739 16 H 0.038 0.962 17 H 0.027 0.973 18 H 0.072 0.928 19 H 0.065 0.935 20 H 0.098 0.902 21 H 0.087 0.913 22 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.582 -8.081 -1.995 9.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.140 3.860 11 O -0.284 6.284 12 C -0.067 4.067 13 C -0.055 4.055 14 O -0.318 6.318 15 H 0.071 0.929 16 H 0.056 0.944 17 H 0.046 0.954 18 H 0.089 0.911 19 H 0.083 0.917 20 H 0.116 0.884 21 H 0.105 0.895 22 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.365 -7.812 -1.928 9.154 hybrid contribution 0.491 0.774 -0.106 0.922 sum 4.856 -7.038 -2.034 8.789 Atomic orbital electron populations 1.69977 1.06081 1.26710 1.50768 1.24997 0.94875 0.99325 0.95263 0.86495 0.79731 0.83060 0.78125 1.20625 1.21227 1.19819 1.21028 0.93182 0.90283 1.50672 0.92249 1.19524 0.93764 0.90320 0.98816 1.24608 0.90108 0.85505 0.85809 1.89390 1.75003 1.21678 1.42309 1.24262 0.97069 0.83489 1.01922 1.24025 0.96368 0.95960 0.89109 1.88861 1.71452 1.29700 1.41767 0.92926 0.94415 0.95436 0.91063 0.91719 0.88385 0.89474 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 13.29 55.43 0.74 -26.91 14 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 14 3 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 14 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 14 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 14 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 14 7 C -0.51 -15.21 8.90 -34.44 -0.31 -15.51 14 8 H 0.06 1.72 7.74 -52.49 -0.41 1.32 14 9 C 0.01 0.36 5.07 -27.89 -0.14 0.22 14 10 C 0.23 5.44 3.96 37.16 0.15 5.59 14 11 O -0.36 -8.12 11.13 -59.04 -0.66 -8.77 14 12 C 0.01 0.15 7.95 38.17 0.30 0.46 14 13 C 0.02 0.35 8.07 38.17 0.31 0.66 14 14 O -0.40 -8.39 11.21 -59.04 -0.66 -9.05 14 15 H 0.26 7.55 8.31 -40.82 -0.34 7.21 14 16 H 0.04 1.10 8.14 -51.93 -0.42 0.67 14 17 H 0.03 0.81 8.14 -51.93 -0.42 0.39 14 18 H 0.07 1.62 8.14 -51.93 -0.42 1.20 14 19 H 0.06 0.89 8.14 -51.93 -0.42 0.47 14 20 H 0.10 1.26 8.14 -51.93 -0.42 0.84 14 21 H 0.09 1.07 8.14 -51.93 -0.42 0.65 14 22 H 0.07 1.06 8.14 -51.93 -0.42 0.64 14 LS Contribution 198.94 15.07 3.00 3.00 Total: -1.00 -32.45 198.94 -4.89 -37.34 By element: Atomic # 1 Polarization: -3.35 SS G_CDS: -2.50 Total: -5.85 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 0.21 Total: -7.01 kcal Atomic # 7 Polarization: -27.65 SS G_CDS: 0.74 Total: -26.91 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -1.32 Total: -17.82 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 3.00 Total: 3.00 kcal Total: -32.45 -4.89 -37.34 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005190691.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.309 kcal (2) G-P(sol) polarization free energy of solvation -32.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds