Wall clock time and date at job start Mon Mar 30 2020 01:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31467 * 1 3 3 Si 1.86799 * 119.99923 * 2 1 4 4 H 1.48503 * 109.46820 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46811 * 299.99672 * 3 2 1 6 6 H 1.48503 * 109.47538 * 59.99554 * 3 2 1 7 7 C 1.38878 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00046 * 172.81171 * 7 2 1 9 9 N 1.37199 * 120.00055 * 353.07896 * 7 2 1 10 10 C 1.47098 * 125.55843 * 5.78310 * 9 7 2 11 11 C 1.54083 * 103.78431 * 179.97438 * 10 9 7 12 12 O 1.45709 * 104.00931 * 359.97438 * 11 10 9 13 13 C 1.33796 * 109.47006 * 359.75927 * 12 11 10 14 14 O 1.21516 * 123.07238 * 180.25002 * 13 12 11 15 15 H 0.97010 * 120.00006 * 0.02562 * 1 2 3 16 16 H 1.08993 * 110.56083 * 298.55328 * 10 9 7 17 17 H 1.09003 * 110.56264 * 61.40002 * 10 9 7 18 18 H 1.08998 * 110.52043 * 118.63052 * 11 10 9 19 19 H 1.08996 * 110.52207 * 241.23291 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2486 1.6177 0.0000 4 1 3.7087 1.3463 0.0006 5 1 1.8899 2.3964 -1.2126 6 1 1.8899 2.3966 1.2124 7 6 2.0091 -1.2027 0.0005 8 1 3.0827 -1.2065 -0.1165 9 7 1.3306 -2.3865 0.1442 10 6 -0.1324 -2.5344 0.1856 11 6 -0.3433 -4.0510 0.3579 12 8 1.0086 -4.5932 0.3945 13 6 1.8923 -3.5973 0.2630 14 8 3.0945 -3.7741 0.2560 15 1 -0.4850 0.8401 -0.0004 16 1 -0.5482 -1.9912 1.0341 17 1 -0.5786 -2.1893 -0.7471 18 1 -0.8649 -4.2606 1.2917 19 1 -0.8973 -4.4582 -0.4879 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019841275.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:22 Heat of formation + Delta-G solvation = -89.200337 kcal Electronic energy + Delta-G solvation = -8698.840511 eV Core-core repulsion = 6795.258288 eV Total energy + Delta-G solvation = -1903.582223 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 157.053 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -42.11278 -37.77404 -36.79826 -33.63099 -30.52918 -27.41513 -24.14918 -22.49104 -19.77644 -17.93101 -17.60560 -17.31719 -16.21906 -15.31850 -14.83259 -14.71764 -14.18839 -13.61368 -12.89713 -12.76826 -12.41744 -12.11103 -11.55339 -11.29477 -11.07846 -10.05303 -8.47051 -6.05406 1.37592 1.42792 1.57016 1.96102 2.05823 2.43831 3.04144 3.23957 3.73015 4.19271 4.30352 4.66176 5.06638 5.25098 5.33660 6.07539 6.40811 6.91931 7.22777 7.77729 8.62028 Molecular weight = 157.05amu Principal moments of inertia in cm(-1) A = 0.087355 B = 0.021084 C = 0.017218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 320.455776 B = 1327.689255 C = 1625.789243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.000 4.000 3 Si 1.005 2.995 4 H -0.273 1.273 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.335 4.335 8 H 0.085 0.915 9 N -0.470 5.470 10 C 0.103 3.897 11 C 0.033 3.967 12 O -0.356 6.356 13 C 0.567 3.433 14 O -0.622 6.622 15 H 0.280 0.720 16 H 0.085 0.915 17 H 0.081 0.919 18 H 0.127 0.873 19 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.480 0.221 0.372 5.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.201 4.201 3 Si 0.828 3.172 4 H -0.198 1.198 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.460 4.460 8 H 0.103 0.897 9 N -0.203 5.203 10 C -0.020 4.020 11 C -0.042 4.042 12 O -0.267 6.267 13 C 0.321 3.679 14 O -0.517 6.517 15 H 0.090 0.910 16 H 0.103 0.897 17 H 0.099 0.901 18 H 0.145 0.855 19 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.060 0.059 0.392 5.076 hybrid contribution 0.274 0.758 -0.064 0.809 sum -4.786 0.818 0.328 4.867 Atomic orbital electron populations 1.69947 1.06507 1.29124 1.48292 1.26108 0.96920 1.02132 0.94978 0.84697 0.77908 0.76049 0.78577 1.19753 1.19227 1.19220 1.19581 0.92643 0.81837 1.51984 0.89715 1.43886 1.07083 1.04753 1.64591 1.22628 0.81030 0.93844 1.04531 1.24833 0.80402 0.92159 1.06761 1.87053 1.19069 1.32959 1.87667 1.18509 0.85414 0.80914 0.83052 1.90764 1.12308 1.85278 1.63388 0.91047 0.89722 0.90065 0.85546 0.85546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.20 10.42 21.65 0.23 -44.98 13 2 C 0.00 0.00 5.48 84.90 0.47 0.47 13 3 Si 1.01 40.94 29.56 68.60 2.03 42.97 13 4 H -0.27 -11.33 7.11 99.48 0.71 -10.63 13 5 H -0.27 -10.32 7.11 99.48 0.71 -9.62 13 6 H -0.27 -10.36 7.11 99.48 0.71 -9.66 13 7 C -0.33 -19.09 9.93 84.01 0.83 -18.25 13 8 H 0.08 5.08 7.69 -2.91 -0.02 5.06 13 9 N -0.47 -25.48 3.08 -764.10 -2.35 -27.84 13 10 C 0.10 4.42 5.66 86.63 0.49 4.91 13 11 C 0.03 1.09 8.23 72.35 0.60 1.68 13 12 O -0.36 -16.29 11.09 -47.54 -0.53 -16.82 13 13 C 0.57 31.43 8.80 129.91 1.14 32.57 13 14 O -0.62 -39.17 17.54 19.63 0.34 -38.83 13 15 H 0.28 12.97 8.31 -92.70 -0.77 12.20 13 16 H 0.08 3.71 7.39 -2.39 -0.02 3.69 13 17 H 0.08 3.54 7.65 -2.39 -0.02 3.52 13 18 H 0.13 3.25 8.14 -2.39 -0.02 3.23 13 19 H 0.13 3.24 8.14 -2.39 -0.02 3.22 13 Total: -1.00 -67.59 178.43 4.50 -63.09 By element: Atomic # 1 Polarization: -0.23 SS G_CDS: 1.25 Total: 1.03 kcal Atomic # 6 Polarization: 17.86 SS G_CDS: 3.53 Total: 21.38 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -2.13 Total: -72.81 kcal Atomic # 8 Polarization: -55.47 SS G_CDS: -0.18 Total: -55.65 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -67.59 4.50 -63.09 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019841275.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.112 kcal (2) G-P(sol) polarization free energy of solvation -67.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds