Wall clock time and date at job start Mon Mar 30 2020 01:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99564 * 2 1 4 4 H 1.48501 * 109.47174 * 273.59328 * 3 2 1 5 5 H 1.48503 * 109.47416 * 33.59218 * 3 2 1 6 6 H 1.48493 * 109.47206 * 153.59648 * 3 2 1 7 7 C 1.37871 * 120.00288 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00179 * 354.86644 * 7 2 1 9 9 C 1.50699 * 120.00205 * 175.13902 * 7 2 1 10 10 C 1.53006 * 115.55015 * 294.55372 * 9 7 2 11 11 S 1.81402 * 109.46619 * 294.82781 * 10 9 7 12 12 C 1.53001 * 117.49993 * 148.87559 * 9 7 2 13 13 C 1.53006 * 117.49766 * 80.21757 * 9 7 2 14 14 H 0.96998 * 120.00133 * 0.02562 * 1 2 3 15 15 H 1.09000 * 109.47287 * 54.82807 * 10 9 7 16 16 H 1.08999 * 109.47013 * 174.83280 * 10 9 7 17 17 H 1.34503 * 102.99819 * 184.99512 * 11 10 9 18 18 H 1.08994 * 117.49577 * 0.02562 * 12 9 7 19 19 H 1.09006 * 117.49427 * 145.02318 * 12 9 7 20 20 H 1.09000 * 117.49912 * 214.98474 * 13 9 7 21 21 H 1.08995 * 117.49723 * 359.97438 * 13 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4205 2.0904 -1.3973 5 1 1.4865 2.6296 0.7746 6 1 3.5825 1.4196 0.6226 7 6 2.0046 -1.1940 0.0005 8 1 1.4679 -2.1274 0.0846 9 6 3.5075 -1.1963 -0.1101 10 6 4.0726 -0.6780 -1.4341 11 16 3.5837 -1.7939 -2.7782 12 6 4.2654 -2.3281 0.5868 13 6 4.3098 -0.9098 1.1609 14 1 -0.4850 0.8400 -0.0004 15 1 3.6814 0.3203 -1.6302 16 1 5.1601 -0.6367 -1.3736 17 1 4.2328 -1.2884 -3.8423 18 1 3.6769 -3.0712 1.1249 19 1 5.1668 -2.7033 0.1021 20 1 5.2404 -0.3524 1.0537 21 1 3.7506 -0.7192 2.0768 RHF calculation, no. of doubly occupied orbitals= 26 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023549724.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:20 Heat of formation + Delta-G solvation = 4.097491 kcal Electronic energy + Delta-G solvation = -7101.546817 eV Core-core repulsion = 5682.877595 eV Total energy + Delta-G solvation = -1418.669222 eV No. of doubly occupied orbitals = 26 Molecular weight (most abundant/longest-lived isotopes) = 158.046 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -38.63520 -34.20431 -29.74846 -27.39964 -23.14735 -21.07229 -18.83903 -17.63328 -16.86740 -15.43028 -15.27019 -14.89980 -14.48390 -13.69765 -12.87020 -12.65023 -12.10898 -12.04271 -11.59232 -11.22918 -10.86981 -10.60682 -10.15942 -8.85421 -8.22311 -6.26776 0.78634 1.34413 1.41490 1.53376 2.00385 2.41166 3.07789 3.39924 4.00897 4.19809 4.43466 4.50110 4.73318 4.97736 5.12075 5.34817 5.57615 5.74064 6.37125 6.78192 7.39767 8.93953 Molecular weight = 158.05amu Principal moments of inertia in cm(-1) A = 0.048192 B = 0.027516 C = 0.023851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.867035 B = 1017.342262 C = 1173.686127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.022 3.978 3 Si 0.924 3.076 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.214 1.214 7 C -0.472 4.472 8 H 0.028 0.972 9 C -0.024 4.024 10 C -0.022 4.022 11 S -0.254 6.254 12 C -0.159 4.159 13 C -0.171 4.171 14 H 0.264 0.736 15 H 0.060 0.940 16 H 0.100 0.900 17 H 0.076 0.924 18 H 0.076 0.924 19 H 0.106 0.894 20 H 0.104 0.896 21 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.930 1.196 -1.167 11.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.175 4.175 3 Si 0.749 3.251 4 H -0.203 1.203 5 H -0.224 1.224 6 H -0.136 1.136 7 C -0.510 4.510 8 H 0.047 0.953 9 C -0.026 4.026 10 C -0.171 4.171 11 S -0.102 6.102 12 C -0.197 4.197 13 C -0.211 4.211 14 H 0.073 0.927 15 H 0.079 0.921 16 H 0.118 0.882 17 H 0.039 0.961 18 H 0.095 0.905 19 H 0.125 0.875 20 H 0.122 0.878 21 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.427 0.652 -1.681 10.582 hybrid contribution 0.292 1.704 -0.191 1.740 sum 10.719 2.356 -1.872 11.133 Atomic orbital electron populations 1.70058 1.08425 1.27853 1.52600 1.25750 0.95125 1.02782 0.93848 0.86102 0.81731 0.78877 0.78425 1.20289 1.22370 1.13617 1.20337 0.89191 0.92591 1.48877 0.95336 1.18924 0.92376 1.02755 0.88537 1.22946 1.02146 0.97781 0.94211 1.87884 1.68454 1.45121 1.08736 1.22862 1.01683 0.91269 1.03852 1.23180 1.01359 0.99008 0.97512 0.92744 0.92127 0.88191 0.96103 0.90540 0.87537 0.87814 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.47 13.96 21.45 0.30 -59.17 14 2 C 0.02 1.27 5.47 84.65 0.46 1.73 14 3 Si 0.92 42.50 24.93 68.60 1.71 44.21 14 4 H -0.28 -12.44 7.04 99.48 0.70 -11.74 14 5 H -0.30 -13.83 7.11 99.48 0.71 -13.12 14 6 H -0.21 -8.52 5.75 99.48 0.57 -7.95 14 7 C -0.47 -26.43 9.05 25.60 0.23 -26.20 14 8 H 0.03 1.83 8.06 -2.91 -0.02 1.80 14 9 C -0.02 -1.05 0.79 -52.92 -0.04 -1.09 14 10 C -0.02 -0.87 5.79 71.98 0.42 -0.45 14 11 S -0.25 -10.05 25.57 -56.49 -1.44 -11.49 14 12 C -0.16 -5.91 9.96 30.62 0.30 -5.61 14 13 C -0.17 -6.32 8.07 30.62 0.25 -6.07 14 14 H 0.26 15.53 8.31 -92.71 -0.77 14.76 14 15 H 0.06 2.46 5.01 -2.39 -0.01 2.45 14 16 H 0.10 3.09 8.09 -2.39 -0.02 3.07 14 17 H 0.08 2.50 9.07 73.35 0.67 3.17 14 18 H 0.08 2.98 8.14 -2.39 -0.02 2.96 14 19 H 0.11 3.31 8.14 -2.38 -0.02 3.29 14 20 H 0.10 3.16 8.14 -2.39 -0.02 3.14 14 21 H 0.08 3.12 8.14 -2.39 -0.02 3.11 14 Total: -1.00 -63.14 194.58 3.93 -59.21 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: 1.74 Total: 4.93 kcal Atomic # 6 Polarization: -39.31 SS G_CDS: 1.62 Total: -37.69 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.30 Total: -59.17 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.71 Total: 44.21 kcal Atomic # 16 Polarization: -10.05 SS G_CDS: -1.44 Total: -11.49 kcal Total: -63.14 3.93 -59.21 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023549724.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.310 kcal (2) G-P(sol) polarization free energy of solvation -63.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds