Wall clock time and date at job start Mon Mar 30 2020 01:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99952 * 2 1 4 4 H 1.48501 * 109.47257 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47167 * 299.99831 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99958 * 3 2 1 7 7 C 1.37876 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99569 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99912 * 359.97438 * 7 2 1 10 10 H 1.08992 * 109.50823 * 300.05464 * 9 7 2 11 11 C 1.53056 * 109.48811 * 179.97438 * 9 7 2 12 12 N 1.46956 * 109.38342 * 181.64181 * 11 9 7 13 13 C 1.46962 * 110.87987 * 59.31148 * 12 11 9 14 14 C 1.53051 * 109.36359 * 300.68149 * 13 12 11 15 15 N 1.46956 * 109.36687 * 58.40092 * 14 13 12 16 16 H 0.97000 * 120.00014 * 0.02562 * 1 2 3 17 17 H 1.09002 * 109.48813 * 61.66459 * 11 9 7 18 18 H 1.09002 * 109.48870 * 301.62348 * 11 9 7 19 19 H 1.00899 * 111.00438 * 295.44657 * 12 11 9 20 20 H 1.09001 * 109.48625 * 60.64585 * 13 12 11 21 21 H 1.09003 * 109.48941 * 180.69193 * 13 12 11 22 22 H 1.09002 * 109.48907 * 178.36861 * 14 13 12 23 23 H 1.09002 * 109.48601 * 298.40885 * 14 13 12 24 24 H 1.00899 * 111.00438 * 64.54446 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0017 10 1 0.6238 -2.5564 0.8912 11 6 2.2453 -3.6627 0.0015 12 7 1.5086 -4.9337 -0.0371 13 6 0.6646 -5.0137 -1.2376 14 6 -0.3300 -3.8503 -1.2371 15 7 0.4068 -2.5794 -1.1985 16 1 -0.4850 0.8400 -0.0004 17 1 2.8530 -3.6220 0.9054 18 1 2.8905 -3.5896 -0.8741 19 1 0.9593 -5.0589 0.7999 20 1 1.2915 -4.9557 -2.1273 21 1 0.1202 -5.9580 -1.2371 22 1 -0.9377 -3.8911 -2.1411 23 1 -0.9751 -3.9239 -0.3616 24 1 0.9560 -2.4542 -2.0356 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026898487.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:06 Heat of formation + Delta-G solvation = 1.058929 kcal Electronic energy + Delta-G solvation = -8792.260343 eV Core-core repulsion = 7126.143812 eV Total energy + Delta-G solvation = -1666.116531 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 156.096 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -37.94714 -32.95185 -31.30002 -29.91092 -25.24641 -23.23251 -21.51007 -19.93893 -16.57442 -15.20948 -14.61290 -13.87864 -13.59013 -13.33636 -13.06275 -11.98266 -11.69739 -10.93067 -10.84756 -10.72332 -10.46113 -10.05182 -9.82880 -9.03143 -8.50556 -8.38557 -6.49818 -5.87231 -4.04289 3.32129 3.40515 3.43872 4.46742 5.02732 5.26461 5.61394 5.76011 5.96124 6.02838 6.24868 6.40464 6.60934 6.71368 6.78130 7.30131 7.66279 7.91091 7.92531 8.21406 8.57359 8.89051 9.10875 9.65018 11.15449 Molecular weight = 156.10amu Principal moments of inertia in cm(-1) A = 0.100601 B = 0.017578 C = 0.015870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 278.259878 B = 1592.543625 C = 1763.933692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.082 3.918 3 Si 0.884 3.116 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.538 4.538 8 H 0.056 0.944 9 C 0.188 3.812 10 H 0.036 0.964 11 C 0.024 3.976 12 N -0.695 5.695 13 C 0.018 3.982 14 C 0.019 3.981 15 N -0.648 5.648 16 H 0.255 0.745 17 H 0.065 0.935 18 H 0.058 0.942 19 H 0.331 0.669 20 H 0.062 0.938 21 H 0.060 0.940 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.321 0.679 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.837 -5.121 -1.345 5.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.125 4.125 3 Si 0.712 3.288 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.577 4.577 8 H 0.074 0.926 9 C 0.080 3.920 10 H 0.053 0.947 11 C -0.107 4.107 12 N -0.322 5.322 13 C -0.114 4.114 14 C -0.114 4.114 15 N -0.276 5.276 16 H 0.065 0.935 17 H 0.083 0.917 18 H 0.077 0.923 19 H 0.147 0.853 20 H 0.080 0.920 21 H 0.079 0.921 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.665 -5.008 -1.343 5.227 hybrid contribution 0.380 0.940 -0.056 1.015 sum 1.045 -4.068 -1.398 4.427 Atomic orbital electron populations 1.70126 1.05762 1.25611 1.46794 1.24999 0.94641 0.98751 0.94119 0.86690 0.80278 0.84329 0.77499 1.19838 1.21065 1.21109 1.20958 0.92399 0.90159 1.54230 0.92579 1.19711 0.89626 0.92621 0.90082 0.94659 1.22848 0.97593 0.88974 1.01291 1.61056 1.30503 1.36091 1.04594 1.22707 0.95753 0.98903 0.94076 1.22643 0.96945 0.90782 1.00988 1.61157 1.32860 1.28225 1.05350 0.93504 0.91696 0.92325 0.85314 0.91960 0.92131 0.92525 0.92319 0.86253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.92 12.77 55.43 0.71 -24.21 14 2 C 0.08 2.29 5.39 -17.82 -0.10 2.19 14 3 Si 0.88 21.28 29.54 -169.99 -5.02 16.26 14 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 14 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 14 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 14 7 C -0.54 -14.85 8.69 -34.44 -0.30 -15.15 14 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 14 9 C 0.19 4.73 2.45 -68.80 -0.17 4.57 14 10 H 0.04 0.99 8.14 -51.93 -0.42 0.57 14 11 C 0.02 0.51 5.94 -3.76 -0.02 0.49 14 12 N -0.69 -13.15 6.91 -113.63 -0.79 -13.93 14 13 C 0.02 0.31 6.72 -3.76 -0.03 0.29 14 14 C 0.02 0.37 6.72 -3.77 -0.03 0.34 14 15 N -0.65 -15.55 5.88 -107.81 -0.63 -16.19 14 16 H 0.26 7.15 8.31 -40.82 -0.34 6.81 14 17 H 0.06 1.37 8.14 -51.93 -0.42 0.95 14 18 H 0.06 1.28 8.14 -51.93 -0.42 0.85 14 19 H 0.33 5.97 8.89 -39.29 -0.35 5.62 14 20 H 0.06 1.10 8.14 -51.93 -0.42 0.68 14 21 H 0.06 0.93 8.14 -51.93 -0.42 0.51 14 22 H 0.06 1.03 8.14 -51.93 -0.42 0.60 14 23 H 0.06 1.20 8.14 -51.93 -0.42 0.78 14 24 H 0.32 7.60 8.79 -39.29 -0.35 7.26 14 LS Contribution 203.03 15.07 3.06 3.06 Total: -1.00 -28.99 203.03 -6.50 -35.50 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -3.19 Total: 6.78 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -0.64 Total: -7.27 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.71 Total: -54.33 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 3.06 Total: 3.06 kcal Total: -28.99 -6.50 -35.50 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026898487.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.555 kcal (2) G-P(sol) polarization free energy of solvation -28.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds