Wall clock time and date at job start Mon Mar 30 2020 02:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.31428 * 119.24256 * 2 1 4 4 C 1.38753 * 121.01276 * 179.97438 * 3 2 1 5 5 C 1.38969 * 119.55506 * 0.02562 * 4 3 2 6 6 C 1.38142 * 118.59089 * 359.71821 * 5 4 3 7 7 C 1.33597 * 119.24201 * 179.97438 * 2 1 3 8 8 C 1.41404 * 119.83012 * 0.02723 * 7 2 1 9 9 H 1.07998 * 119.99989 * 28.79855 * 8 7 2 10 10 C 1.40038 * 120.00493 * 208.79999 * 8 7 2 11 11 N 1.30743 * 119.99669 * 14.73238 * 10 8 7 12 12 Si 1.86793 * 120.00503 * 194.73884 * 10 8 7 13 13 H 1.48503 * 109.47233 * 265.44724 * 12 10 8 14 14 H 1.48500 * 109.46953 * 25.44518 * 12 10 8 15 15 H 1.48497 * 109.47287 * 145.44566 * 12 10 8 16 16 H 1.09001 * 109.47017 * 270.02560 * 1 2 3 17 17 H 1.08996 * 109.47059 * 30.02049 * 1 2 3 18 18 H 1.08992 * 109.46958 * 150.02475 * 1 2 3 19 19 H 1.08000 * 119.49402 * 359.97438 * 3 2 1 20 20 H 1.07998 * 120.21713 * 179.97438 * 4 3 2 21 21 H 1.08002 * 120.70322 * 179.97438 * 5 4 3 22 22 H 1.08003 * 120.51323 * 180.26376 * 6 5 4 23 23 H 0.96997 * 119.99806 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1071 1.1468 0.0000 4 6 3.4939 1.1896 0.0005 5 6 4.2164 0.0025 0.0005 6 6 3.5240 -1.1928 0.0060 7 6 2.1177 -1.1657 0.0005 8 6 1.3909 -2.3787 0.0005 9 1 0.4105 -2.4208 -0.4505 10 6 1.9423 -3.5255 0.5852 11 7 2.9796 -3.4225 1.3744 12 14 1.1962 -5.2023 0.2374 13 1 0.2249 -5.5435 1.3077 14 1 0.4983 -5.1713 -1.0730 15 1 2.2722 -6.2250 0.2011 16 1 -0.3633 0.0005 1.0277 17 1 -0.3633 0.8898 -0.5141 18 1 -0.3633 -0.8901 -0.5134 19 1 1.5466 2.0700 -0.0004 20 1 4.0084 2.1392 0.0001 21 1 5.2964 0.0143 0.0005 22 1 4.0542 -2.1337 0.0104 23 1 3.3613 -4.2168 1.7797 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034069151.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:46 Heat of formation + Delta-G solvation = 94.299388 kcal Electronic energy + Delta-G solvation = -8979.690843 eV Core-core repulsion = 7295.784510 eV Total energy + Delta-G solvation = -1683.906333 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 164.077 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.29105 -36.52006 -35.55773 -32.56078 -28.83158 -28.38217 -24.85904 -23.69133 -20.04967 -18.47947 -17.87811 -17.02071 -16.58534 -16.33873 -15.45943 -14.92411 -13.91078 -13.84538 -13.33733 -13.24918 -13.05046 -12.56367 -12.33884 -11.99949 -11.52589 -10.97104 -10.25297 -9.32595 -7.29745 -0.13989 0.27824 1.33258 1.36295 1.50408 1.77738 1.98599 2.19457 2.83029 3.72829 3.88399 4.04081 4.30123 4.42295 4.44661 4.57445 4.64819 4.83557 5.00028 5.24531 5.30276 5.49280 5.64478 6.04081 6.15980 6.26103 7.61650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.422 5.422 3 C 0.115 3.885 4 C -0.229 4.229 5 C -0.050 4.050 6 C -0.178 4.178 7 C 0.250 3.750 8 C -0.426 4.426 9 H 0.131 0.869 10 C 0.054 3.946 11 N -0.764 5.764 12 Si 0.981 3.019 13 H -0.264 1.264 14 H -0.247 1.247 15 H -0.275 1.275 16 H 0.095 0.905 17 H 0.123 0.877 18 H 0.100 0.900 19 H 0.211 0.789 20 H 0.169 0.831 21 H 0.146 0.854 22 H 0.135 0.865 23 H 0.312 0.688 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.751 7.066 -2.127 7.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.093 5.093 3 C -0.019 4.019 4 C -0.251 4.251 5 C -0.073 4.073 6 C -0.198 4.198 7 C 0.136 3.864 8 C -0.457 4.457 9 H 0.148 0.852 10 C -0.173 4.173 11 N -0.386 5.386 12 Si 0.802 3.198 13 H -0.189 1.189 14 H -0.170 1.170 15 H -0.199 1.199 16 H 0.113 0.887 17 H 0.142 0.858 18 H 0.118 0.882 19 H 0.227 0.773 20 H 0.187 0.813 21 H 0.164 0.836 22 H 0.153 0.847 23 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.812 6.992 -1.965 7.788 hybrid contribution 0.178 -1.032 0.108 1.053 sum -2.634 5.960 -1.857 6.775 Atomic orbital electron populations 1.22929 0.74205 1.07298 1.06040 1.42328 1.10885 1.04843 1.51261 1.22810 0.94936 0.90702 0.93486 1.21640 0.92535 1.00156 1.10795 1.21905 1.01732 0.92225 0.91441 1.21856 0.92256 0.99884 1.05804 1.18266 0.92391 0.85968 0.89743 1.20428 1.05221 0.91494 1.28588 0.85167 1.26616 0.94172 1.04798 0.91726 1.69633 1.16745 1.35885 1.16313 0.85054 0.79045 0.75002 0.80669 1.18899 1.17033 1.19938 0.88692 0.85840 0.88179 0.77270 0.81326 0.83620 0.84711 0.87614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.33 10.07 127.77 1.29 0.96 14 2 N -0.42 1.07 2.84 -541.14 -1.54 -0.47 14 3 C 0.12 -0.80 10.20 84.88 0.87 0.06 14 4 C -0.23 0.99 10.12 22.57 0.23 1.22 14 5 C -0.05 -0.05 10.16 22.42 0.23 0.17 14 6 C -0.18 -1.25 8.69 22.84 0.20 -1.05 14 7 C 0.25 1.39 6.26 40.25 0.25 1.64 14 8 C -0.43 -3.13 8.24 23.49 0.19 -2.94 14 9 H 0.13 0.37 6.04 -2.91 -0.02 0.36 14 10 C 0.05 0.54 5.17 85.29 0.44 0.98 14 11 N -0.76 -9.94 11.03 21.84 0.24 -9.70 14 12 Si 0.98 6.36 29.58 68.60 2.03 8.39 14 13 H -0.26 -2.06 7.11 99.48 0.71 -1.35 14 14 H -0.25 -1.47 7.11 99.48 0.71 -0.76 14 15 H -0.27 -2.40 7.11 99.48 0.71 -1.69 14 16 H 0.09 -0.94 8.14 -2.39 -0.02 -0.96 14 17 H 0.12 -2.00 7.95 -2.39 -0.02 -2.02 14 18 H 0.10 -0.83 5.88 -2.39 -0.01 -0.84 14 19 H 0.21 -3.43 7.95 -2.91 -0.02 -3.46 14 20 H 0.17 -1.64 8.06 -2.91 -0.02 -1.67 14 21 H 0.15 -0.34 8.06 -2.91 -0.02 -0.36 14 22 H 0.14 1.46 6.35 -2.91 -0.02 1.44 14 23 H 0.31 3.49 8.29 -92.71 -0.77 2.72 14 Total: 0.00 -14.94 200.41 5.62 -9.32 By element: Atomic # 1 Polarization: -9.79 SS G_CDS: 1.19 Total: -8.59 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 3.69 Total: 1.05 kcal Atomic # 7 Polarization: -8.87 SS G_CDS: -1.30 Total: -10.17 kcal Atomic # 14 Polarization: 6.36 SS G_CDS: 2.03 Total: 8.39 kcal Total: -14.94 5.62 -9.32 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034069151.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.621 kcal (2) G-P(sol) polarization free energy of solvation -14.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds