Wall clock time and date at job start Mon Mar 30 2020 02:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37743 * 120.57409 * 2 1 4 4 N 1.32011 * 121.01185 * 180.28377 * 3 2 1 5 5 C 1.32035 * 122.31818 * 359.71546 * 4 3 2 6 6 C 1.37702 * 121.01571 * 0.02562 * 5 4 3 7 7 C 1.41043 * 120.57109 * 179.72456 * 2 1 3 8 8 C 1.41500 * 121.02577 * 359.97438 * 7 2 1 9 9 H 1.08001 * 120.00198 * 28.25285 * 8 7 2 10 10 C 1.40053 * 119.99845 * 208.24159 * 8 7 2 11 11 N 1.30730 * 120.00072 * 196.79272 * 10 8 7 12 12 Si 1.86799 * 119.99970 * 16.79388 * 10 8 7 13 13 H 1.48510 * 109.46997 * 269.99892 * 12 10 8 14 14 H 1.48498 * 109.47267 * 29.99658 * 12 10 8 15 15 H 1.48496 * 109.47319 * 150.00005 * 12 10 8 16 16 H 1.09000 * 109.47037 * 270.27749 * 1 2 3 17 17 H 1.09001 * 109.47054 * 30.27779 * 1 2 3 18 18 H 1.09005 * 109.46853 * 150.27466 * 1 2 3 19 19 H 1.07996 * 119.49238 * 359.97438 * 3 2 1 20 20 H 1.07997 * 119.49453 * 180.02562 * 5 4 3 21 21 H 1.07996 * 120.57504 * 180.02562 * 6 5 4 22 22 H 0.97004 * 120.00354 * 355.48739 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2077 1.1859 0.0000 4 7 3.5277 1.1960 -0.0056 5 6 4.2421 0.0856 -0.0059 6 6 3.6336 -1.1496 -0.0008 7 6 2.2244 -1.2144 0.0058 8 6 1.5513 -2.4590 0.0124 9 1 0.5696 -2.5444 -0.4296 10 6 2.1583 -3.5803 0.5917 11 7 1.7112 -4.7786 0.3212 12 14 3.6070 -3.3637 1.7510 13 1 4.8718 -3.3900 0.9731 14 1 3.4865 -2.0622 2.4560 15 1 3.6144 -4.4665 2.7454 16 1 -0.3633 0.0050 1.0277 17 1 -0.3633 0.8875 -0.5181 18 1 -0.3633 -0.8925 -0.5096 19 1 1.6688 2.1218 -0.0004 20 1 5.3203 0.1471 -0.0102 21 1 4.2249 -2.0533 -0.0007 22 1 0.9191 -4.8883 -0.2280 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035569996.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:32 Heat of formation + Delta-G solvation = -10.300843 kcal Electronic energy + Delta-G solvation = -8716.765917 eV Core-core repulsion = 7041.979517 eV Total energy + Delta-G solvation = -1674.786400 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 163.069 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.45739 -36.10573 -33.95334 -32.59819 -28.42376 -26.92903 -23.68577 -22.05021 -20.34038 -17.26779 -17.04753 -16.30295 -15.40089 -15.05269 -14.47428 -13.94162 -13.79999 -13.38411 -13.07419 -12.75133 -12.22038 -12.02205 -11.39895 -11.14315 -10.22029 -9.88802 -9.52734 -9.36904 -6.75720 0.61986 0.77554 1.35269 1.53131 1.73339 2.13036 2.65606 3.44817 3.91308 4.27413 4.40429 4.63211 4.73863 4.86883 4.91704 5.04366 5.32313 5.40495 5.46252 5.67713 5.96905 6.28452 6.45586 6.68476 7.53833 7.91853 Molecular weight = 163.07amu Principal moments of inertia in cm(-1) A = 0.054084 B = 0.023891 C = 0.017959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.589535 B = 1171.690425 C = 1558.742927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.251 4.251 3 C 0.105 3.895 4 N -0.580 5.580 5 C 0.109 3.891 6 C -0.308 4.308 7 C 0.092 3.908 8 C -0.532 4.532 9 H 0.062 0.938 10 C 0.014 3.986 11 N -0.832 5.832 12 Si 1.106 2.894 13 H -0.253 1.253 14 H -0.271 1.271 15 H -0.278 1.278 16 H 0.058 0.942 17 H 0.075 0.925 18 H 0.042 0.958 19 H 0.159 0.841 20 H 0.161 0.839 21 H 0.117 0.883 22 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.403 4.605 1.495 5.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.255 4.255 3 C -0.047 4.047 4 N -0.294 5.294 5 C -0.045 4.045 6 C -0.330 4.330 7 C 0.084 3.916 8 C -0.563 4.563 9 H 0.080 0.920 10 C -0.201 4.201 11 N -0.456 5.456 12 Si 0.928 3.072 13 H -0.179 1.179 14 H -0.196 1.196 15 H -0.205 1.205 16 H 0.077 0.923 17 H 0.093 0.907 18 H 0.061 0.939 19 H 0.177 0.823 20 H 0.179 0.821 21 H 0.134 0.866 22 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.857 4.507 2.323 5.820 hybrid contribution -1.980 -0.442 -1.227 2.371 sum 0.877 4.065 1.097 4.301 Atomic orbital electron populations 1.20312 0.90522 1.01295 1.01168 1.21190 0.97712 0.93692 1.12910 1.22460 0.90192 0.97014 0.95075 1.67561 1.08275 1.31353 1.22248 1.22505 1.00068 0.87734 0.94209 1.22212 0.95219 0.99046 1.16500 1.18160 0.92379 0.93534 0.87511 1.20680 1.04738 0.94844 1.36000 0.91960 1.28278 1.03816 0.90815 0.97234 1.70566 1.20425 1.24364 1.30233 0.83162 0.72960 0.76342 0.74775 1.17892 1.19613 1.20506 0.92314 0.90662 0.93935 0.82345 0.82138 0.86562 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.92 9.68 71.24 0.69 -2.23 14 2 C -0.25 -11.47 5.96 -19.29 -0.11 -11.58 14 3 C 0.10 4.43 10.85 84.55 0.92 5.35 14 4 N -0.58 -25.61 10.34 -196.40 -2.03 -27.64 14 5 C 0.11 4.69 11.16 84.54 0.94 5.63 14 6 C -0.31 -14.60 7.36 22.84 0.17 -14.44 14 7 C 0.09 4.70 5.17 -21.09 -0.11 4.59 14 8 C -0.53 -28.67 8.90 23.51 0.21 -28.46 14 9 H 0.06 3.49 6.62 -2.91 -0.02 3.48 14 10 C 0.01 0.75 5.45 85.30 0.46 1.21 14 11 N -0.83 -44.72 13.65 21.84 0.30 -44.42 14 12 Si 1.11 48.13 24.90 68.60 1.71 49.84 14 13 H -0.25 -10.08 6.45 99.48 0.64 -9.44 14 14 H -0.27 -11.95 6.98 99.48 0.69 -11.26 14 15 H -0.28 -11.53 7.11 99.48 0.71 -10.83 14 16 H 0.06 2.14 8.14 -2.39 -0.02 2.12 14 17 H 0.07 2.38 8.10 -2.39 -0.02 2.36 14 18 H 0.04 1.75 6.42 -2.38 -0.02 1.74 14 19 H 0.16 5.47 8.06 -2.91 -0.02 5.44 14 20 H 0.16 5.66 8.06 -2.91 -0.02 5.64 14 21 H 0.12 5.33 4.41 -2.91 -0.01 5.32 14 22 H 0.28 14.89 8.73 -92.70 -0.81 14.08 14 Total: -1.00 -57.75 192.46 4.24 -53.51 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 1.10 Total: 8.65 kcal Atomic # 6 Polarization: -43.10 SS G_CDS: 3.17 Total: -39.93 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -1.73 Total: -72.06 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 1.71 Total: 49.84 kcal Total: -57.75 4.24 -53.51 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035569996.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.207 kcal (2) G-P(sol) polarization free energy of solvation -57.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds