Wall clock time and date at job start Mon Mar 30 2020 02:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 N 1.32315 * 127.71188 * 293.65515 * 3 2 1 5 5 N 1.28317 * 109.30518 * 180.02562 * 4 3 2 6 6 H 0.97002 * 123.58154 * 180.02562 * 5 4 3 7 7 N 1.28366 * 112.82723 * 359.73353 * 5 4 3 8 8 C 1.33312 * 108.89019 * 0.43536 * 7 5 4 9 9 C 1.41198 * 127.80306 * 179.86674 * 8 7 5 10 10 H 1.07999 * 120.00317 * 179.67517 * 9 8 7 11 11 C 1.40035 * 119.99685 * 359.67685 * 9 8 7 12 12 N 1.30783 * 119.99749 * 359.72568 * 11 9 8 13 13 Si 1.86795 * 119.99976 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47317 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47320 * 120.00326 * 13 11 9 16 16 H 1.48501 * 109.47213 * 240.00187 * 13 11 9 17 17 H 0.97000 * 119.99388 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3775 -0.4190 0.9588 5 7 4.5950 -0.2554 0.5879 6 1 5.3593 -0.4949 1.1349 7 7 4.6937 0.2535 -0.5865 8 6 3.4693 0.4694 -1.0676 9 6 3.1157 1.0175 -2.3199 10 1 2.0750 1.1323 -2.5848 11 6 4.1146 1.4122 -3.2185 12 7 5.3748 1.2781 -2.8956 13 14 3.6469 2.1381 -4.8750 14 1 2.1675 2.1882 -4.9936 15 1 4.1999 3.5116 -4.9874 16 1 4.2016 1.2907 -5.9611 17 1 6.0666 1.5519 -3.5180 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038804950.mol2 17 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:51 Heat of formation + Delta-G solvation = 114.263749 kcal Electronic energy + Delta-G solvation = -8353.481601 eV Core-core repulsion = 6515.130472 eV Total energy + Delta-G solvation = -1838.351129 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 164.039 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -41.53254 -35.55558 -33.88659 -30.96648 -30.62621 -26.33628 -23.25861 -21.01414 -17.36105 -17.15481 -16.32514 -14.88688 -14.82870 -13.20643 -12.48067 -12.40009 -12.26918 -11.74928 -11.35134 -10.94755 -10.42574 -9.74859 -9.74075 -9.08678 -8.70054 -8.05419 -6.73511 -4.64217 2.45157 2.97341 3.09595 3.15398 3.51004 3.74380 3.92429 3.99822 4.42022 5.09214 5.23583 6.15317 6.64740 7.08559 7.38103 8.06855 8.26761 8.46041 8.51301 8.75440 9.89362 10.23238 Molecular weight = 164.04amu Principal moments of inertia in cm(-1) A = 0.055386 B = 0.019217 C = 0.014339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.421390 B = 1456.709518 C = 1952.286990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C 0.343 3.657 3 C -0.057 4.057 4 N -0.265 5.265 5 N -0.255 5.255 6 H 0.451 0.549 7 N -0.342 5.342 8 C 0.217 3.783 9 C -0.425 4.425 10 H 0.092 0.908 11 C 0.073 3.927 12 N -0.756 5.756 13 Si 0.916 3.084 14 H -0.259 1.259 15 H -0.273 1.273 16 H -0.273 1.273 17 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.866 -0.013 0.022 1.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.148 5.148 2 C 0.029 3.971 3 C -0.220 4.220 4 N -0.118 5.118 5 N -0.082 5.082 6 H 0.299 0.701 7 N -0.192 5.192 8 C 0.067 3.933 9 C -0.463 4.463 10 H 0.110 0.890 11 C -0.150 4.150 12 N -0.382 5.382 13 Si 0.741 3.259 14 H -0.183 1.183 15 H -0.198 1.198 16 H -0.198 1.198 17 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.374 -0.301 0.685 1.565 hybrid contribution 0.128 0.403 -0.923 1.015 sum 1.503 0.101 -0.239 1.525 Atomic orbital electron populations 1.81106 1.11311 1.12716 1.09682 1.23557 0.90031 0.91603 0.91924 1.18766 0.86724 1.19298 0.97254 1.73548 0.92995 1.19460 1.25812 1.45532 1.04199 1.45122 1.13390 0.70134 1.75468 1.21707 1.26135 0.95861 1.21255 0.84537 0.94099 0.93428 1.18709 0.94749 1.36543 0.96322 0.89028 1.25906 0.94441 0.94363 1.00280 1.69887 1.00247 1.32847 1.35172 0.86104 0.80196 0.78951 0.80690 1.18252 1.19797 1.19800 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.69 18.54 41.84 0.78 -9.92 13 2 C 0.34 7.93 15.90 -22.47 -0.36 7.57 13 3 C -0.06 -1.38 7.35 -82.02 -0.60 -1.98 13 4 N -0.26 -5.84 12.31 33.77 0.42 -5.43 13 5 N -0.25 -5.33 7.65 60.35 0.46 -4.87 13 6 H 0.45 7.19 8.96 -340.21 -3.05 4.14 13 7 N -0.34 -8.58 10.72 33.52 0.36 -8.22 13 8 C 0.22 5.64 7.04 -82.38 -0.58 5.06 13 9 C -0.42 -10.99 9.39 -37.79 -0.35 -11.34 13 10 H 0.09 2.28 7.85 -52.49 -0.41 1.87 13 11 C 0.07 1.79 5.50 -17.32 -0.10 1.69 13 12 N -0.76 -19.20 12.05 55.55 0.67 -18.54 13 13 Si 0.92 18.21 29.56 -169.99 -5.02 13.19 13 14 H -0.26 -5.12 7.11 56.52 0.40 -4.71 13 15 H -0.27 -5.32 7.11 56.52 0.40 -4.92 13 16 H -0.27 -5.32 7.11 56.52 0.40 -4.92 13 17 H 0.28 6.40 8.29 -40.82 -0.34 6.06 13 LS Contribution 182.42 15.07 2.75 2.75 Total: -1.00 -28.35 182.42 -4.18 -32.53 By element: Atomic # 1 Polarization: 0.10 SS G_CDS: -2.60 Total: -2.49 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -1.99 Total: 1.00 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 2.68 Total: -46.97 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.02 Total: 13.19 kcal Total LS contribution 2.75 Total: 2.75 kcal Total: -28.35 -4.18 -32.53 kcal The number of atoms in the molecule is 17 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038804950.mol2 17 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.792 kcal (2) G-P(sol) polarization free energy of solvation -28.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds