Wall clock time and date at job start Mon Mar 30 2020 02:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31316 * 1 3 3 Si 1.86806 * 119.99746 * 2 1 4 4 H 1.48503 * 109.46603 * 269.99357 * 3 2 1 5 5 H 1.48500 * 109.47151 * 29.99125 * 3 2 1 6 6 H 1.48498 * 109.47427 * 149.99572 * 3 2 1 7 7 C 1.38982 * 120.00602 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00332 * 162.17201 * 7 2 1 9 9 N 1.36834 * 119.99710 * 342.17799 * 7 2 1 10 10 C 1.36250 * 118.63206 * 329.70389 * 9 7 2 11 11 C 1.34618 * 121.25776 * 179.75107 * 10 9 7 12 12 C 1.47000 * 118.56125 * 0.51348 * 11 10 9 13 13 N 1.32064 * 121.18723 * 179.72786 * 12 11 10 14 14 C 1.46994 * 117.62366 * 359.74773 * 12 11 10 15 15 C 1.34621 * 118.56325 * 0.02562 * 14 12 11 16 16 H 0.96999 * 120.00251 * 0.02562 * 1 2 3 17 17 H 1.08001 * 119.36864 * 0.03146 * 10 9 7 18 18 H 1.07998 * 120.72405 * 180.23566 * 11 10 9 19 19 H 0.96992 * 119.99968 * 0.02562 * 13 12 11 20 20 H 1.08002 * 120.71866 * 179.97438 * 14 12 11 21 21 H 1.08006 * 119.36851 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2471 1.6178 0.0000 4 1 2.4947 2.0463 -1.4001 5 1 1.4444 2.6528 0.6998 6 1 3.5446 1.4404 0.7001 7 6 2.0082 -1.2035 0.0005 8 1 3.0492 -1.2261 -0.2858 9 7 1.3733 -2.3600 0.3638 10 6 0.3575 -2.2905 1.2691 11 6 -0.3064 -3.3943 1.6601 12 6 0.0940 -4.6918 1.0969 13 7 -0.5182 -5.8080 1.4481 14 6 1.2004 -4.7024 0.1292 15 6 1.7874 -3.5338 -0.1903 16 1 -0.4850 0.8400 -0.0004 17 1 0.0767 -1.3309 1.6775 18 1 -1.1128 -3.3288 2.3755 19 1 -1.2464 -5.7810 2.0882 20 1 1.5356 -5.6279 -0.3154 21 1 2.6019 -3.5266 -0.8996 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039078006.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:12 Heat of formation + Delta-G solvation = 47.834582 kcal Electronic energy + Delta-G solvation = -8703.688344 eV Core-core repulsion = 6965.996974 eV Total energy + Delta-G solvation = -1737.691370 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 164.064 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.05196 -34.41682 -32.47814 -30.20718 -29.00517 -24.79794 -22.10647 -20.96655 -18.63340 -15.83895 -15.67179 -14.77293 -14.66103 -13.33066 -13.26076 -12.71472 -11.97586 -11.40396 -11.29935 -11.11529 -10.65166 -10.53301 -10.06426 -9.10533 -8.34688 -7.90474 -6.97593 -6.38697 -4.40948 2.64217 2.77399 2.98098 3.01492 3.07860 3.74091 4.44488 4.68092 5.10138 5.71529 6.09746 6.33928 6.49503 6.72063 6.97379 7.15870 7.30152 7.42156 7.67339 7.99886 8.31714 8.89236 9.04093 9.66135 10.13455 Molecular weight = 164.06amu Principal moments of inertia in cm(-1) A = 0.107768 B = 0.014999 C = 0.013673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 259.754908 B = 1866.369643 C = 2047.316306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.048 3.952 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.376 4.376 8 H 0.108 0.892 9 N -0.313 5.313 10 C 0.172 3.828 11 C -0.338 4.338 12 C 0.273 3.727 13 N -0.826 5.826 14 C -0.251 4.251 15 C 0.107 3.893 16 H 0.282 0.718 17 H 0.152 0.848 18 H 0.114 0.886 19 H 0.305 0.695 20 H 0.124 0.876 21 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.532 3.425 0.171 4.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.162 4.162 3 Si 0.758 3.242 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.503 4.503 8 H 0.126 0.874 9 N 0.018 4.982 10 C 0.039 3.961 11 C -0.368 4.368 12 C 0.100 3.900 13 N -0.450 5.450 14 C -0.280 4.280 15 C -0.025 4.025 16 H 0.093 0.907 17 H 0.169 0.831 18 H 0.132 0.868 19 H 0.116 0.884 20 H 0.142 0.858 21 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.570 2.737 -0.176 4.501 hybrid contribution -0.349 1.645 0.464 1.745 sum 3.220 4.382 0.288 5.445 Atomic orbital electron populations 1.69893 1.06468 1.29389 1.42193 1.25549 0.95484 1.00876 0.94250 0.85817 0.79623 0.79659 0.79087 1.19624 1.20101 1.18712 1.19917 0.96549 0.83657 1.50221 0.87409 1.39215 1.25092 1.05765 1.28120 1.21576 0.87602 0.99232 0.87657 1.22406 1.08526 0.93399 1.12447 1.21218 0.90635 0.88449 0.89720 1.70428 1.19367 1.27819 1.27362 1.21130 1.02614 0.96535 1.07691 1.21567 0.98992 0.85864 0.96048 0.90687 0.83115 0.86819 0.88441 0.85790 0.84195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.85 11.23 55.50 0.62 -20.22 14 2 C 0.05 1.12 4.92 -17.50 -0.09 1.03 14 3 Si 0.93 17.57 29.59 -169.99 -5.03 12.54 14 4 H -0.27 -5.08 7.11 56.52 0.40 -4.68 14 5 H -0.28 -5.18 7.11 56.52 0.40 -4.78 14 6 H -0.26 -4.85 7.11 56.52 0.40 -4.45 14 7 C -0.38 -8.87 9.34 -15.04 -0.14 -9.01 14 8 H 0.11 2.35 7.89 -52.49 -0.41 1.93 14 9 N -0.31 -7.50 2.77 -62.58 -0.17 -7.67 14 10 C 0.17 4.17 8.96 -16.87 -0.15 4.02 14 11 C -0.34 -8.05 10.20 -37.31 -0.38 -8.43 14 12 C 0.27 6.74 7.15 -80.67 -0.58 6.16 14 13 N -0.83 -20.44 14.17 34.47 0.49 -19.96 14 14 C -0.25 -5.69 10.29 -37.32 -0.38 -6.08 14 15 C 0.11 2.34 10.19 -16.87 -0.17 2.17 14 16 H 0.28 6.44 8.31 -40.82 -0.34 6.10 14 17 H 0.15 3.66 6.19 -52.49 -0.32 3.33 14 18 H 0.11 2.50 8.06 -52.49 -0.42 2.08 14 19 H 0.31 7.03 8.81 -40.82 -0.36 6.67 14 20 H 0.12 2.58 8.06 -52.49 -0.42 2.15 14 21 H 0.14 2.57 8.02 -52.48 -0.42 2.15 14 LS Contribution 195.48 15.07 2.95 2.95 Total: -1.00 -27.46 195.48 -4.54 -31.99 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -1.50 Total: 10.50 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -1.89 Total: -10.13 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 0.94 Total: -47.85 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Total LS contribution 2.95 Total: 2.95 kcal Total: -27.46 -4.54 -31.99 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039078006.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.827 kcal (2) G-P(sol) polarization free energy of solvation -27.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds