Wall clock time and date at job start Mon Mar 30 2020 02:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38058 * 120.89975 * 2 1 4 4 C 1.38584 * 119.42663 * 180.02562 * 3 2 1 5 5 N 1.32082 * 121.31824 * 0.02562 * 4 3 2 6 6 C 1.31483 * 121.98444 * 359.97438 * 5 4 3 7 7 C 1.40748 * 120.39646 * 359.71617 * 6 5 4 8 8 C 1.41411 * 120.66166 * 180.31244 * 7 6 5 9 9 H 1.08000 * 120.00021 * 149.93627 * 8 7 6 10 10 C 1.39949 * 119.99846 * 329.92463 * 8 7 6 11 11 N 1.30823 * 119.99928 * 162.28481 * 10 8 7 12 12 Si 1.86803 * 120.00106 * 342.29290 * 10 8 7 13 13 H 1.48501 * 109.47121 * 95.37925 * 12 10 8 14 14 H 1.48495 * 109.46848 * 215.37564 * 12 10 8 15 15 H 1.48501 * 109.46920 * 335.37611 * 12 10 8 16 16 H 1.09004 * 109.47097 * 90.00131 * 1 2 3 17 17 H 1.09001 * 109.47690 * 329.99833 * 1 2 3 18 18 H 1.09000 * 109.46745 * 209.99809 * 1 2 3 19 19 H 1.08006 * 120.28585 * 359.97438 * 3 2 1 20 20 H 1.07997 * 119.33745 * 180.02562 * 4 3 2 21 21 H 1.07994 * 119.79804 * 180.02562 * 6 5 4 22 22 H 0.97000 * 120.00132 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2160 1.1846 0.0000 4 6 3.6013 1.1490 -0.0005 5 7 4.2587 0.0034 -0.0016 6 6 3.6379 -1.1557 -0.0016 7 6 2.2315 -1.2104 0.0054 8 6 1.5582 -2.4539 0.0121 9 1 0.5916 -2.5421 0.4856 10 6 2.1444 -3.5702 -0.5953 11 7 1.7174 -4.7723 -0.3051 12 14 3.5366 -3.3439 -1.8200 13 1 4.8389 -3.4926 -1.1221 14 1 3.4276 -4.3696 -2.8883 15 1 3.4499 -1.9897 -2.4232 16 1 -0.3633 0.0000 -1.0277 17 1 -0.3634 0.8899 0.5138 18 1 -0.3633 -0.8900 0.5138 19 1 1.6954 2.1310 -0.0004 20 1 4.1545 2.0765 -0.0001 21 1 4.2107 -2.0713 -0.0020 22 1 2.1239 -5.5461 -0.7257 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044368401.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:31 Heat of formation + Delta-G solvation = 12.267554 kcal Electronic energy + Delta-G solvation = -8711.817448 eV Core-core repulsion = 7038.009687 eV Total energy + Delta-G solvation = -1673.807761 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 163.069 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.61322 -33.95640 -32.55365 -30.48587 -27.04213 -25.09312 -21.90674 -20.30446 -17.65281 -15.72453 -15.05815 -14.59891 -13.68758 -13.21241 -12.80163 -12.19010 -11.84134 -11.54062 -11.39581 -11.01323 -10.89199 -10.21649 -9.97174 -9.31416 -8.25213 -8.13013 -7.75856 -7.04190 -4.58360 2.46452 2.56808 3.09997 3.17602 3.28431 3.91677 4.51103 5.35285 5.76032 5.92780 6.05155 6.28200 6.45358 6.48834 6.66539 6.75343 6.96132 7.20470 7.38604 7.55644 7.93676 8.18567 8.45561 8.63467 9.43010 9.96668 Molecular weight = 163.07amu Principal moments of inertia in cm(-1) A = 0.054484 B = 0.023848 C = 0.018121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.784614 B = 1173.837344 C = 1544.765842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.153 4.153 3 C -0.132 4.132 4 C -0.041 4.041 5 N -0.463 5.463 6 C -0.028 4.028 7 C 0.046 3.954 8 C -0.435 4.435 9 H 0.097 0.903 10 C 0.085 3.915 11 N -0.801 5.801 12 Si 0.908 3.092 13 H -0.265 1.265 14 H -0.286 1.286 15 H -0.248 1.248 16 H 0.053 0.947 17 H 0.044 0.956 18 H 0.065 0.935 19 H 0.104 0.896 20 H 0.124 0.876 21 H 0.130 0.870 22 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.350 3.932 -1.538 4.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.161 4.161 3 C -0.152 4.152 4 C -0.197 4.197 5 N -0.171 5.171 6 C -0.190 4.190 7 C 0.041 3.959 8 C -0.464 4.464 9 H 0.114 0.886 10 C -0.135 4.135 11 N -0.425 5.425 12 Si 0.734 3.266 13 H -0.190 1.190 14 H -0.214 1.214 15 H -0.171 1.171 16 H 0.072 0.928 17 H 0.063 0.937 18 H 0.084 0.916 19 H 0.122 0.878 20 H 0.141 0.859 21 H 0.147 0.853 22 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.498 3.672 -1.544 4.014 hybrid contribution -0.333 -0.097 -0.512 0.619 sum 0.164 3.575 -2.056 4.127 Atomic orbital electron populations 1.20422 0.92255 1.00960 1.00752 1.20130 0.95264 0.92627 1.08097 1.21472 0.95386 0.97017 1.01366 1.21740 0.91249 0.94926 1.11832 1.66964 1.42014 0.98715 1.09402 1.22510 0.91980 0.94415 1.10064 1.18525 0.92718 0.93609 0.91063 1.19436 1.05740 0.90644 1.30585 0.88554 1.26144 0.96800 0.94219 0.96365 1.69671 1.38283 0.99296 1.35220 0.86375 0.80494 0.79707 0.80064 1.19038 1.21355 1.17141 0.92795 0.93749 0.91620 0.87825 0.85882 0.85339 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.71 9.70 36.01 0.35 -1.36 14 2 C -0.15 -3.57 5.97 -103.62 -0.62 -4.19 14 3 C -0.13 -2.86 9.79 -39.52 -0.39 -3.24 14 4 C -0.04 -0.93 11.17 -17.32 -0.19 -1.12 14 5 N -0.46 -11.66 10.34 -12.55 -0.13 -11.79 14 6 C -0.03 -0.73 8.37 -16.75 -0.14 -0.87 14 7 C 0.05 1.18 5.11 -106.67 -0.54 0.63 14 8 C -0.44 -11.55 8.98 -37.73 -0.34 -11.88 14 9 H 0.10 2.62 6.66 -52.49 -0.35 2.27 14 10 C 0.08 2.18 5.42 -17.34 -0.09 2.09 14 11 N -0.80 -20.85 13.93 55.55 0.77 -20.08 14 12 Si 0.91 20.91 24.52 -169.99 -4.17 16.74 14 13 H -0.26 -5.98 6.72 56.52 0.38 -5.60 14 14 H -0.29 -6.27 7.11 56.52 0.40 -5.87 14 15 H -0.25 -6.04 6.84 56.52 0.39 -5.65 14 16 H 0.05 1.00 8.14 -51.93 -0.42 0.58 14 17 H 0.04 0.75 8.10 -51.93 -0.42 0.32 14 18 H 0.06 1.33 6.44 -51.93 -0.33 0.99 14 19 H 0.10 1.87 8.06 -52.48 -0.42 1.45 14 20 H 0.12 2.37 8.06 -52.49 -0.42 1.95 14 21 H 0.13 3.29 4.75 -52.49 -0.25 3.04 14 22 H 0.29 6.77 8.30 -40.82 -0.34 6.43 14 LS Contribution 192.47 15.07 2.90 2.90 Total: -1.00 -27.88 192.47 -4.39 -32.27 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -1.79 Total: -0.09 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -1.97 Total: -19.95 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.64 Total: -31.87 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.17 Total: 16.74 kcal Total LS contribution 2.90 Total: 2.90 kcal Total: -27.88 -4.39 -32.27 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368401.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.533 kcal (2) G-P(sol) polarization free energy of solvation -27.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds