Wall clock time and date at job start Mon Mar 30 2020 02:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38630 * 120.29079 * 2 1 4 4 N 1.32058 * 121.32122 * 179.97438 * 3 2 1 5 5 C 1.31505 * 121.97754 * 0.02562 * 4 3 2 6 6 C 1.40707 * 120.40318 * 0.02562 * 5 4 3 7 7 C 1.41414 * 120.66236 * 180.02562 * 6 5 4 8 8 H 1.07998 * 119.99587 * 335.80981 * 7 6 5 9 9 C 1.39949 * 120.00446 * 155.81362 * 7 6 5 10 10 N 1.30822 * 119.99493 * 342.95857 * 9 7 6 11 11 Si 1.86793 * 120.00073 * 162.95974 * 9 7 6 12 12 H 1.48491 * 109.47504 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47126 * 120.00246 * 11 9 7 14 14 H 1.48504 * 109.47224 * 239.99834 * 11 9 7 15 15 C 1.38018 * 120.28685 * 179.97438 * 2 1 3 16 16 H 1.09002 * 109.46710 * 89.99599 * 1 2 3 17 17 H 1.08999 * 109.47188 * 209.99837 * 1 2 3 18 18 H 1.08997 * 109.46984 * 330.00371 * 1 2 3 19 19 H 1.07997 * 119.33346 * 359.97438 * 3 2 1 20 20 H 1.08003 * 119.79311 * 179.97438 * 5 4 3 21 21 H 0.97004 * 119.99655 * 179.97438 * 10 9 7 22 22 H 1.07992 * 120.90165 * 359.97438 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.1970 0.0000 4 7 3.5266 1.2208 0.0005 5 6 4.2430 0.1180 0.0005 6 6 3.6132 -1.1403 -0.0005 7 6 4.3782 -2.3296 0.0000 8 1 5.3883 -2.3221 -0.3821 9 6 3.8264 -3.5164 0.4956 10 7 2.7593 -3.4759 1.2513 11 14 4.6136 -5.1581 0.0782 12 1 5.7999 -4.9328 -0.7861 13 1 5.0342 -5.8379 1.3297 14 1 3.6320 -6.0091 -0.6414 15 6 2.2031 -1.1918 0.0005 16 1 -0.3633 0.0001 -1.0277 17 1 -0.3633 -0.8900 0.5138 18 1 -0.3633 0.8900 0.5138 19 1 1.6601 2.1288 -0.0004 20 1 5.3213 0.1786 0.0005 21 1 2.3765 -4.2985 1.5945 22 1 1.6826 -2.1380 0.0014 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044370896.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:30 Heat of formation + Delta-G solvation = -8.985418 kcal Electronic energy + Delta-G solvation = -8578.850122 eV Core-core repulsion = 6904.120762 eV Total energy + Delta-G solvation = -1674.729359 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 163.069 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.20778 -35.97323 -33.97470 -32.21388 -27.76517 -27.47894 -23.63714 -22.20069 -19.06690 -17.46377 -17.01587 -16.31960 -15.22008 -14.71271 -14.11107 -13.48980 -13.47634 -13.26633 -13.14556 -13.00632 -12.69864 -12.15014 -11.58484 -11.22216 -10.07126 -9.87796 -9.42223 -8.70823 -6.47688 0.75736 1.03295 1.38810 1.50408 1.55048 2.18199 2.69360 3.66873 4.13373 4.39024 4.52408 4.73606 4.82396 4.91154 5.08046 5.15089 5.31011 5.40619 5.86189 5.91057 6.06321 6.49756 6.74464 6.79443 7.69644 8.23543 Molecular weight = 163.07amu Principal moments of inertia in cm(-1) A = 0.071619 B = 0.016909 C = 0.014200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.865321 B = 1655.479879 C = 1971.377797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.123 4.123 3 C -0.050 4.050 4 N -0.483 5.483 5 C -0.050 4.050 6 C 0.037 3.963 7 C -0.485 4.485 8 H 0.084 0.916 9 C 0.035 3.965 10 N -0.819 5.819 11 Si 0.990 3.010 12 H -0.257 1.257 13 H -0.264 1.264 14 H -0.262 1.262 15 C -0.162 4.162 16 H 0.076 0.924 17 H 0.057 0.943 18 H 0.079 0.921 19 H 0.149 0.851 20 H 0.132 0.868 21 H 0.293 0.707 22 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.579 -2.146 -1.544 3.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.208 4.208 4 N -0.191 5.191 5 C -0.211 4.211 6 C 0.033 3.967 7 C -0.514 4.514 8 H 0.102 0.898 9 C -0.181 4.181 10 N -0.444 5.444 11 Si 0.810 3.190 12 H -0.180 1.180 13 H -0.189 1.189 14 H -0.187 1.187 15 C -0.188 4.188 16 H 0.094 0.906 17 H 0.076 0.924 18 H 0.098 0.902 19 H 0.167 0.833 20 H 0.149 0.851 21 H 0.103 0.897 22 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.323 -1.469 -1.394 3.082 hybrid contribution -0.022 -1.415 0.040 1.415 sum -2.345 -2.883 -1.354 3.956 Atomic orbital electron populations 1.20613 0.89363 1.02619 1.02419 1.20986 0.98067 0.93930 0.99523 1.22172 0.89724 0.97000 1.11886 1.66968 1.08938 1.32726 1.10449 1.22634 0.98588 0.88105 1.11776 1.18904 0.93733 0.94339 0.89767 1.19876 1.01180 0.93375 1.36948 0.89761 1.26878 0.94858 1.04910 0.91488 1.69846 1.19901 1.32001 1.22685 0.85032 0.79250 0.75417 0.79269 1.17992 1.18884 1.18667 1.21644 0.94160 0.97207 1.05787 0.90562 0.92355 0.90247 0.83334 0.85056 0.89662 0.86536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.23 10.03 71.24 0.71 -2.52 14 2 C -0.12 -5.72 5.89 -19.82 -0.12 -5.84 14 3 C -0.05 -2.37 10.85 84.75 0.92 -1.45 14 4 N -0.48 -24.99 10.34 -193.60 -2.00 -26.99 14 5 C -0.05 -2.70 10.98 85.35 0.94 -1.76 14 6 C 0.04 2.04 5.59 -21.19 -0.12 1.92 14 7 C -0.48 -25.95 9.09 23.47 0.21 -25.74 14 8 H 0.08 4.31 7.90 -2.91 -0.02 4.29 14 9 C 0.03 1.71 5.19 85.26 0.44 2.15 14 10 N -0.82 -41.76 10.93 21.83 0.24 -41.52 14 11 Si 0.99 36.91 29.59 68.60 2.03 38.94 14 12 H -0.26 -9.37 7.11 99.48 0.71 -8.67 14 13 H -0.26 -9.41 7.11 99.48 0.71 -8.70 14 14 H -0.26 -9.33 7.11 99.48 0.71 -8.62 14 15 C -0.16 -8.57 8.48 22.92 0.19 -8.38 14 16 H 0.08 2.35 8.14 -2.39 -0.02 2.33 14 17 H 0.06 2.01 8.09 -2.39 -0.02 1.99 14 18 H 0.08 2.35 8.09 -2.39 -0.02 2.33 14 19 H 0.15 5.89 8.06 -2.91 -0.02 5.86 14 20 H 0.13 6.56 8.06 -2.91 -0.02 6.54 14 21 H 0.29 13.27 8.30 -92.71 -0.77 12.50 14 22 H 0.12 6.29 6.22 -2.91 -0.02 6.27 14 Total: -1.00 -59.74 201.11 4.66 -55.08 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 1.21 Total: 16.11 kcal Atomic # 6 Polarization: -44.80 SS G_CDS: 3.19 Total: -41.62 kcal Atomic # 7 Polarization: -66.75 SS G_CDS: -1.76 Total: -68.51 kcal Atomic # 14 Polarization: 36.91 SS G_CDS: 2.03 Total: 38.94 kcal Total: -59.74 4.66 -55.08 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044370896.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.095 kcal (2) G-P(sol) polarization free energy of solvation -59.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds