Wall clock time and date at job start Mon Mar 30 2020 01:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48084 * 110.99624 * 2 1 4 4 C 1.54225 * 105.75436 * 214.66027 * 3 2 1 5 5 C 1.54569 * 104.49957 * 1.00301 * 4 3 2 6 6 H 1.08999 * 110.61685 * 264.02388 * 5 4 3 7 7 C 1.50700 * 110.61964 * 141.18006 * 5 4 3 8 8 H 1.08005 * 119.99948 * 359.97438 * 7 5 4 9 9 C 1.37879 * 120.00130 * 180.02562 * 7 5 4 10 10 N 1.31509 * 119.99990 * 180.02562 * 9 7 5 11 11 Si 1.86801 * 119.99743 * 359.97438 * 9 7 5 12 12 H 1.48495 * 109.47121 * 90.00356 * 11 9 7 13 13 H 1.48500 * 109.46765 * 210.00057 * 11 9 7 14 14 H 1.48497 * 109.47055 * 330.00032 * 11 9 7 15 15 N 1.46890 * 111.00034 * 242.75256 * 2 1 3 16 16 H 1.09002 * 109.47401 * 59.99695 * 1 2 3 17 17 H 1.09001 * 109.46874 * 299.99707 * 1 2 3 18 18 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 19 19 H 1.08995 * 110.19705 * 333.73698 * 3 2 1 20 20 H 1.09005 * 110.19185 * 95.59601 * 3 2 1 21 21 H 1.09001 * 110.42630 * 119.75716 * 4 3 2 22 22 H 1.08996 * 110.42915 * 242.12513 * 4 3 2 23 23 H 0.96996 * 120.00233 * 180.02562 * 10 9 7 24 24 H 1.00901 * 110.99644 * 280.11731 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9996 1.3825 0.0000 4 6 3.2895 1.3360 -0.8441 5 6 3.3952 -0.1345 -1.3085 6 1 4.0476 -0.7009 -0.6439 7 6 3.8942 -0.2080 -2.7287 8 1 4.1207 0.6993 -3.2691 9 6 4.0605 -1.4333 -3.3384 10 7 4.4963 -1.4974 -4.5775 11 14 3.6680 -3.0025 -2.4040 12 1 2.2447 -3.3656 -2.6221 13 1 4.5396 -4.1009 -2.8929 14 1 3.9077 -2.7883 -0.9542 15 7 1.9954 -0.6278 -1.2192 16 1 -0.3634 0.5139 -0.8900 17 1 -0.3633 0.5138 0.8900 18 1 -0.3633 -1.0277 -0.0005 19 1 1.2780 2.0625 -0.4526 20 1 2.2276 1.6980 1.0182 21 1 3.2059 2.0013 -1.7035 22 1 4.1522 1.6078 -0.2360 23 1 4.6130 -2.3594 -5.0067 24 1 1.9705 -1.6340 -1.1474 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075521632.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:06 Heat of formation + Delta-G solvation = 14.002387 kcal Electronic energy + Delta-G solvation = -8762.335821 eV Core-core repulsion = 7096.780560 eV Total energy + Delta-G solvation = -1665.555261 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 156.096 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.41904 -35.06734 -33.01910 -31.21555 -28.31173 -25.39797 -22.62397 -21.51565 -18.96767 -17.78798 -16.51621 -15.76203 -15.45738 -14.88401 -14.48525 -13.79545 -13.42194 -13.19506 -12.73099 -12.58954 -12.04699 -12.00952 -11.70514 -11.51298 -10.91656 -10.68237 -8.71359 -8.35040 -6.42428 1.30075 1.32837 1.38957 2.28220 2.62682 3.13752 3.90836 4.07889 4.19715 4.42510 4.60124 4.68042 4.74307 4.92129 4.97911 5.22326 5.24544 5.51152 5.82005 6.17544 6.28522 6.42176 6.65455 7.25391 8.81164 Molecular weight = 156.10amu Principal moments of inertia in cm(-1) A = 0.070106 B = 0.021817 C = 0.018414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.298026 B = 1283.087264 C = 1520.220739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.410 5.410 3 C 0.041 3.959 4 C -0.115 4.115 5 C 0.158 3.842 6 H 0.013 0.987 7 C -0.507 4.507 8 H 0.040 0.960 9 C 0.022 3.978 10 N -0.942 5.942 11 Si 0.942 3.058 12 H -0.259 1.259 13 H -0.284 1.284 14 H -0.254 1.254 15 N -0.533 5.533 16 H 0.026 0.974 17 H 0.097 0.903 18 H 0.066 0.934 19 H 0.052 0.948 20 H 0.105 0.895 21 H 0.055 0.945 22 H 0.080 0.920 23 H 0.269 0.731 24 H 0.318 0.682 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.008 1.453 10.220 11.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.223 5.223 3 C -0.088 4.088 4 C -0.153 4.153 5 C 0.049 3.951 6 H 0.031 0.969 7 C -0.546 4.546 8 H 0.058 0.942 9 C -0.177 4.177 10 N -0.582 5.582 11 Si 0.766 3.234 12 H -0.184 1.184 13 H -0.210 1.210 14 H -0.178 1.178 15 N -0.256 5.256 16 H 0.044 0.956 17 H 0.115 0.885 18 H 0.084 0.916 19 H 0.071 0.929 20 H 0.123 0.877 21 H 0.074 0.926 22 H 0.099 0.901 23 H 0.078 0.922 24 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.148 1.518 10.074 11.899 hybrid contribution 0.195 -0.812 -0.339 0.902 sum -5.952 0.705 9.734 11.432 Atomic orbital electron populations 1.22526 0.86581 1.02361 1.01315 1.67725 1.09754 1.15647 1.29222 1.23041 0.95807 0.89088 1.00852 1.22424 0.97910 0.96162 0.98830 1.20516 0.85553 0.94185 0.94799 0.96893 1.21130 1.42366 0.93342 0.97783 0.94196 1.25889 0.93590 1.02749 0.95495 1.70025 1.47513 1.26633 1.13998 0.85862 0.79110 0.78756 0.79640 1.18441 1.20972 1.17841 1.67552 1.20750 1.10514 1.26814 0.95571 0.88464 0.91565 0.92916 0.87696 0.92649 0.90144 0.92230 0.86614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.89 127.69 1.26 1.89 14 2 N -0.41 -15.25 5.99 -532.01 -3.19 -18.44 14 3 C 0.04 1.36 6.92 86.49 0.60 1.96 14 4 C -0.11 -4.62 6.60 31.54 0.21 -4.41 14 5 C 0.16 7.70 2.71 44.36 0.12 7.82 14 6 H 0.01 0.66 7.04 -2.39 -0.02 0.65 14 7 C -0.51 -29.70 9.34 25.60 0.24 -29.47 14 8 H 0.04 2.57 7.80 -2.91 -0.02 2.54 14 9 C 0.02 1.29 5.47 84.66 0.46 1.76 14 10 N -0.94 -59.16 13.96 21.45 0.30 -58.86 14 11 Si 0.94 44.78 25.05 68.60 1.72 46.50 14 12 H -0.26 -11.78 7.11 99.48 0.71 -11.07 14 13 H -0.28 -13.16 7.11 99.48 0.71 -12.46 14 14 H -0.25 -11.45 6.46 99.48 0.64 -10.80 14 15 N -0.53 -24.43 6.88 -166.30 -1.14 -25.57 14 16 H 0.03 0.81 8.09 -2.39 -0.02 0.79 14 17 H 0.10 2.22 8.14 -2.39 -0.02 2.20 14 18 H 0.07 1.88 8.14 -2.38 -0.02 1.86 14 19 H 0.05 1.66 7.75 -2.39 -0.02 1.64 14 20 H 0.10 2.84 8.14 -2.38 -0.02 2.82 14 21 H 0.05 2.36 7.69 -2.39 -0.02 2.34 14 22 H 0.08 2.85 8.14 -2.39 -0.02 2.83 14 23 H 0.27 15.70 8.31 -92.71 -0.77 14.93 14 24 H 0.32 14.45 5.95 -203.76 -1.21 13.24 14 Total: -1.00 -65.79 198.69 0.48 -65.31 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -0.10 Total: 11.51 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: 2.89 Total: -20.44 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -4.03 Total: -102.87 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.72 Total: 46.50 kcal Total: -65.79 0.48 -65.31 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075521632.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.312 kcal (2) G-P(sol) polarization free energy of solvation -65.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds