Wall clock time and date at job start Mon Mar 30 2020 01:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09004 * 109.50688 * 60.19626 * 9 7 2 11 11 C 1.53098 * 109.50611 * 180.27923 * 9 7 2 12 12 O 1.43020 * 109.26170 * 176.78627 * 11 9 7 13 13 C 1.43013 * 113.73499 * 301.33345 * 12 11 9 14 14 C 1.53103 * 109.26035 * 58.66894 * 13 12 11 15 15 N 1.47013 * 109.51018 * 300.06158 * 9 7 2 16 16 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 17 17 H 1.09001 * 109.50714 * 296.71845 * 11 9 7 18 18 H 1.08994 * 109.50937 * 56.81077 * 11 9 7 19 19 H 1.09004 * 109.50577 * 178.60012 * 13 12 11 20 20 H 1.09000 * 109.50572 * 298.72728 * 13 12 11 21 21 H 1.08995 * 109.50903 * 63.08627 * 14 13 12 22 22 H 1.09001 * 109.50359 * 183.17385 * 14 13 12 23 23 H 1.00891 * 110.99873 * 305.22273 * 15 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6231 -2.5608 -0.8834 11 6 2.2454 -3.6633 0.0105 12 8 1.5267 -4.8971 0.0918 13 6 0.6973 -5.0048 1.2519 14 6 -0.3127 -3.8542 1.2593 15 7 0.4097 -2.5748 1.2085 16 1 -0.4850 0.8400 0.0004 17 1 2.8329 -3.6442 -0.9074 18 1 2.9095 -3.5710 0.8698 19 1 0.1652 -5.9560 1.2319 20 1 1.3160 -4.9520 2.1477 21 1 -0.9663 -3.9380 0.3911 22 1 -0.9097 -3.8999 2.1701 23 1 0.9591 -2.4363 2.0433 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082411408.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:59 Heat of formation + Delta-G solvation = -45.742686 kcal Electronic energy + Delta-G solvation = -8899.065700 eV Core-core repulsion = 7133.201037 eV Total energy + Delta-G solvation = -1765.864663 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 157.084 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -38.42598 -33.88629 -32.15169 -30.10628 -25.67938 -24.44797 -21.99315 -19.89173 -16.71370 -15.37222 -14.90016 -14.50868 -14.08004 -13.56154 -13.52835 -12.04145 -11.62115 -11.12141 -10.91232 -10.81668 -10.52299 -10.17636 -9.77123 -9.22483 -9.03333 -8.43889 -6.74263 -5.90271 -4.07150 3.33818 3.38922 3.40758 4.43292 4.66459 5.23815 5.64883 5.69030 5.85134 5.94386 6.22211 6.29129 6.56717 6.64996 6.72442 7.33129 7.79357 7.95882 8.18297 8.51361 8.85831 9.06608 9.62137 11.13825 Molecular weight = 157.08amu Principal moments of inertia in cm(-1) A = 0.101479 B = 0.017533 C = 0.015801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 275.852298 B = 1596.614533 C = 1771.579499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.084 3.916 3 Si 0.887 3.113 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.544 4.544 8 H 0.056 0.944 9 C 0.191 3.809 10 H 0.046 0.954 11 C 0.028 3.972 12 O -0.400 6.400 13 C 0.023 3.977 14 C 0.021 3.979 15 N -0.648 5.648 16 H 0.258 0.742 17 H 0.084 0.916 18 H 0.035 0.965 19 H 0.079 0.921 20 H 0.037 0.963 21 H 0.069 0.931 22 H 0.062 0.938 23 H 0.320 0.680 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.313 -4.721 2.395 5.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.124 4.124 3 Si 0.715 3.285 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.074 0.926 9 C 0.083 3.917 10 H 0.064 0.936 11 C -0.050 4.050 12 O -0.319 6.319 13 C -0.056 4.056 14 C -0.110 4.110 15 N -0.276 5.276 16 H 0.067 0.933 17 H 0.102 0.898 18 H 0.053 0.947 19 H 0.097 0.903 20 H 0.055 0.945 21 H 0.087 0.913 22 H 0.081 0.919 23 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.600 -4.384 1.960 4.840 hybrid contribution 1.163 0.474 0.514 1.357 sum 1.763 -3.910 2.474 4.951 Atomic orbital electron populations 1.70104 1.05763 1.25979 1.46145 1.24971 0.94659 0.98741 0.93993 0.86776 0.79709 0.83493 0.78553 1.20288 1.21306 1.20311 1.20829 0.92335 0.90070 1.55060 0.92616 1.19692 0.89736 0.91651 0.90581 0.93565 1.23557 0.95317 0.85453 1.00679 1.87902 1.61003 1.38995 1.43993 1.23242 0.93843 1.00252 0.88285 1.22612 0.96855 0.89997 1.01563 1.61192 1.33538 1.27523 1.05348 0.93258 0.89767 0.94664 0.90291 0.94487 0.91282 0.91910 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.74 12.78 55.43 0.71 -24.04 14 2 C 0.08 2.34 5.39 -17.82 -0.10 2.24 14 3 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 14 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 14 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 14 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 14 7 C -0.54 -15.00 8.68 -34.44 -0.30 -15.30 14 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 14 9 C 0.19 4.92 2.49 -68.75 -0.17 4.75 14 10 H 0.05 1.34 8.14 -51.93 -0.42 0.91 14 11 C 0.03 0.62 6.23 37.21 0.23 0.86 14 12 O -0.40 -8.62 10.83 -35.23 -0.38 -9.00 14 13 C 0.02 0.42 7.00 37.21 0.26 0.68 14 14 C 0.02 0.42 6.76 -3.71 -0.03 0.39 14 15 N -0.65 -15.68 5.90 -107.67 -0.63 -16.32 14 16 H 0.26 7.19 8.31 -40.82 -0.34 6.85 14 17 H 0.08 1.81 8.14 -51.93 -0.42 1.39 14 18 H 0.04 0.76 8.14 -51.93 -0.42 0.34 14 19 H 0.08 1.23 8.14 -51.93 -0.42 0.81 14 20 H 0.04 0.64 8.14 -51.93 -0.42 0.22 14 21 H 0.07 1.46 8.14 -51.93 -0.42 1.04 14 22 H 0.06 1.11 8.14 -51.93 -0.42 0.69 14 23 H 0.32 7.52 8.78 -39.30 -0.35 7.17 14 LS Contribution 198.75 15.07 3.00 3.00 Total: -1.00 -29.51 198.75 -5.28 -34.79 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -2.85 Total: 1.84 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -0.10 Total: -6.38 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.07 Total: -40.35 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.38 Total: -9.00 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 3.00 Total: 3.00 kcal Total: -29.51 -5.28 -34.79 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082411408.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.952 kcal (2) G-P(sol) polarization free energy of solvation -29.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds