Wall clock time and date at job start Mon Mar 30 2020 01:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.08996 * 110.46469 * 299.12926 * 9 7 2 11 11 C 1.54480 * 110.50961 * 61.73400 * 9 7 2 12 12 O 1.44428 * 104.80477 * 142.62078 * 11 9 7 13 13 C 1.44425 * 105.27444 * 319.48815 * 12 11 9 14 14 C 1.54484 * 104.80369 * 40.51038 * 13 12 11 15 15 H 1.09000 * 110.50830 * 94.66422 * 14 13 12 16 16 O 1.42901 * 110.51416 * 217.37381 * 14 13 12 17 17 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 18 18 H 1.08995 * 110.37320 * 261.45116 * 11 9 7 19 19 H 1.09005 * 110.37277 * 23.79411 * 11 9 7 20 20 H 1.09003 * 110.37300 * 159.34031 * 13 12 11 21 21 H 1.08999 * 110.37433 * 281.57114 * 13 12 11 22 22 H 0.96698 * 114.00159 * 294.64732 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6340 -2.5787 0.9002 11 6 0.3816 -2.6278 -1.2650 12 8 0.4601 -4.0241 -1.6259 13 6 1.8374 -4.3977 -1.4037 14 6 2.2309 -3.6902 -0.0880 15 1 2.0984 -4.3611 0.7608 16 8 3.5803 -3.2246 -0.1539 17 1 -0.4850 0.8400 0.0004 18 1 -0.6497 -2.3492 -1.0487 19 1 0.7839 -2.0060 -2.0648 20 1 1.9243 -5.4787 -1.2939 21 1 2.4626 -4.0489 -2.2256 22 1 4.2377 -3.9312 -0.2138 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084233483.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:05 Heat of formation + Delta-G solvation = -98.821998 kcal Electronic energy + Delta-G solvation = -9022.293850 eV Core-core repulsion = 7156.408833 eV Total energy + Delta-G solvation = -1865.885017 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 158.073 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -38.51588 -35.21040 -32.94155 -29.62992 -27.58042 -24.53615 -21.87669 -19.60785 -17.32013 -15.67165 -15.19409 -14.42882 -14.22939 -13.93647 -13.06073 -12.18574 -11.90415 -11.32344 -10.93815 -10.66994 -10.49245 -10.17404 -9.30644 -9.24926 -8.76974 -8.70783 -8.40216 -6.01674 -4.00523 3.34508 3.40437 3.46030 4.46713 4.85163 5.31777 5.36558 5.61893 5.76320 5.97929 6.38406 6.49888 6.82353 6.95558 7.27701 7.58175 7.79808 8.03073 8.31653 8.59606 9.10287 9.64365 11.10165 Molecular weight = 158.07amu Principal moments of inertia in cm(-1) A = 0.072829 B = 0.020832 C = 0.017411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.368784 B = 1343.756979 C = 1607.826362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.497 4.497 8 H 0.078 0.922 9 C 0.024 3.976 10 H 0.043 0.957 11 C 0.064 3.936 12 O -0.400 6.400 13 C 0.020 3.980 14 C 0.071 3.929 15 H 0.048 0.952 16 O -0.535 6.535 17 H 0.261 0.739 18 H 0.087 0.913 19 H 0.051 0.949 20 H 0.072 0.928 21 H 0.056 0.944 22 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.687 -5.221 -1.041 6.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.535 4.535 8 H 0.096 0.904 9 C 0.005 3.995 10 H 0.061 0.939 11 C -0.012 4.012 12 O -0.320 6.320 13 C -0.058 4.058 14 C 0.012 3.988 15 H 0.066 0.934 16 O -0.337 6.337 17 H 0.070 0.930 18 H 0.105 0.895 19 H 0.069 0.931 20 H 0.090 0.910 21 H 0.074 0.926 22 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 3.046 -4.626 -1.077 5.642 hybrid contribution 0.769 0.497 0.015 0.916 sum 3.815 -4.129 -1.062 5.720 Atomic orbital electron populations 1.69943 1.05951 1.26732 1.51411 1.25059 0.94914 0.99387 0.95327 0.86485 0.79809 0.83035 0.78021 1.20772 1.21405 1.19850 1.21046 0.94182 0.88884 1.49375 0.90358 1.20079 0.91656 0.92734 0.95029 0.93872 1.23715 1.01685 0.78411 0.97346 1.88971 1.25440 1.29102 1.88468 1.23985 0.85459 0.98518 0.97851 1.23287 0.83861 0.97143 0.94507 0.93450 1.86888 1.15208 1.34790 1.96785 0.92968 0.89500 0.93063 0.90993 0.92574 0.80716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.27 12.38 55.43 0.69 -25.59 14 2 C 0.05 1.52 5.33 -17.82 -0.10 1.43 14 3 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 14 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 14 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 14 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 14 7 C -0.50 -14.14 8.14 -34.44 -0.28 -14.42 14 8 H 0.08 2.27 6.22 -52.49 -0.33 1.94 14 9 C 0.02 0.62 3.05 -90.20 -0.28 0.34 14 10 H 0.04 1.19 8.14 -51.93 -0.42 0.77 14 11 C 0.06 1.63 6.21 37.93 0.24 1.86 14 12 O -0.40 -9.22 11.65 -35.23 -0.41 -9.63 14 13 C 0.02 0.39 7.38 37.94 0.28 0.67 14 14 C 0.07 1.53 4.46 -25.16 -0.11 1.41 14 15 H 0.05 0.92 8.14 -51.93 -0.42 0.50 14 16 O -0.53 -11.06 11.12 -35.23 -0.39 -11.45 14 17 H 0.26 7.24 8.31 -40.82 -0.34 6.90 14 18 H 0.09 2.27 7.96 -51.93 -0.41 1.86 14 19 H 0.05 1.36 7.86 -51.93 -0.41 0.95 14 20 H 0.07 1.15 8.14 -51.93 -0.42 0.73 14 21 H 0.06 1.08 8.09 -51.93 -0.42 0.66 14 22 H 0.35 5.04 9.12 45.56 0.42 5.46 14 LS Contribution 192.56 15.07 2.90 2.90 Total: -1.00 -30.92 192.56 -4.04 -34.96 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -1.56 Total: 0.56 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -0.25 Total: -8.71 kcal Atomic # 7 Polarization: -26.27 SS G_CDS: 0.69 Total: -25.59 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.80 Total: -21.08 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 2.90 Total: 2.90 kcal Total: -30.92 -4.04 -34.96 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233483.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.864 kcal (2) G-P(sol) polarization free energy of solvation -30.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds