Wall clock time and date at job start Mon Mar 30 2020 01:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99966 * 2 1 4 4 H 1.48502 * 109.46786 * 270.00178 * 3 2 1 5 5 H 1.48493 * 109.47171 * 29.99878 * 3 2 1 6 6 H 1.48490 * 109.47123 * 150.00406 * 3 2 1 7 7 C 1.37881 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00078 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00049 * 179.97438 * 7 2 1 10 10 H 1.08993 * 110.56841 * 57.31530 * 9 7 2 11 11 C 1.54486 * 110.51011 * 294.63774 * 9 7 2 12 12 O 1.44421 * 104.80269 * 217.37830 * 11 9 7 13 13 C 1.44419 * 105.27785 * 40.51394 * 12 11 9 14 14 C 1.54487 * 104.80357 * 319.48638 * 13 12 11 15 15 H 1.08991 * 110.51176 * 142.62222 * 14 13 12 16 16 O 1.42903 * 110.51117 * 265.33575 * 14 13 12 17 17 H 0.96999 * 120.00179 * 0.02562 * 1 2 3 18 18 H 1.09003 * 110.36984 * 98.54535 * 11 9 7 19 19 H 1.09005 * 110.46644 * 336.25949 * 11 9 7 20 20 H 1.09006 * 110.37190 * 200.65887 * 13 12 11 21 21 H 1.08993 * 110.37353 * 78.31874 * 13 12 11 22 22 H 0.96695 * 113.99639 * 298.54094 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8948 -0.6432 0.8577 11 6 4.0523 -0.5906 -1.3164 12 8 5.2207 -1.3790 -1.6312 13 6 4.8567 -2.7408 -1.3171 14 6 4.0529 -2.6412 -0.0016 15 1 3.2306 -3.3566 -0.0014 16 8 4.9063 -2.8570 1.1242 17 1 -0.4850 0.8400 -0.0004 18 1 4.3275 0.4539 -1.1697 19 1 3.3100 -0.6788 -2.1097 20 1 5.7500 -3.3482 -1.1709 21 1 4.2371 -3.1603 -2.1096 22 1 5.3213 -3.7302 1.1414 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233490.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:06 Heat of formation + Delta-G solvation = -123.599064 kcal Electronic energy + Delta-G solvation = -9008.233368 eV Core-core repulsion = 7141.273937 eV Total energy + Delta-G solvation = -1866.959431 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 158.073 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -40.49291 -36.90600 -35.18163 -32.41623 -29.57525 -26.50778 -23.86870 -21.50132 -19.48196 -17.77086 -17.40368 -16.81177 -16.06039 -15.78854 -14.99462 -14.19132 -13.99975 -13.46618 -12.97559 -12.66006 -12.41097 -11.94589 -11.68063 -11.23669 -11.04989 -10.82714 -10.48038 -8.37916 -6.44359 1.28545 1.33142 1.42783 2.27201 2.94054 3.08944 3.44542 3.79285 4.10073 4.30286 4.40167 4.66466 4.72723 4.84521 4.99964 5.28112 5.42612 5.83171 6.17748 6.60877 7.00614 7.21397 8.77804 Molecular weight = 158.07amu Principal moments of inertia in cm(-1) A = 0.067899 B = 0.021981 C = 0.019640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.277085 B = 1273.541893 C = 1425.304344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.021 3.979 3 Si 0.928 3.072 4 H -0.254 1.254 5 H -0.282 1.282 6 H -0.254 1.254 7 C -0.521 4.521 8 H 0.045 0.955 9 C -0.017 4.017 10 H 0.037 0.963 11 C 0.042 3.958 12 O -0.395 6.395 13 C 0.021 3.979 14 C 0.083 3.917 15 H 0.068 0.932 16 O -0.576 6.576 17 H 0.270 0.730 18 H 0.075 0.925 19 H 0.061 0.939 20 H 0.121 0.879 21 H 0.075 0.925 22 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.032 -3.200 -2.035 9.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.177 4.177 3 Si 0.752 3.248 4 H -0.178 1.178 5 H -0.208 1.208 6 H -0.178 1.178 7 C -0.558 4.558 8 H 0.063 0.937 9 C -0.037 4.037 10 H 0.055 0.945 11 C -0.035 4.035 12 O -0.314 6.314 13 C -0.056 4.056 14 C 0.024 3.976 15 H 0.085 0.915 16 O -0.384 6.384 17 H 0.079 0.921 18 H 0.093 0.907 19 H 0.079 0.921 20 H 0.139 0.861 21 H 0.093 0.907 22 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 8.889 -2.413 -1.986 9.422 hybrid contribution -0.289 0.130 0.044 0.320 sum 8.600 -2.283 -1.942 9.108 Atomic orbital electron populations 1.70004 1.07933 1.28420 1.51491 1.25790 0.95479 1.02751 0.93723 0.86076 0.79437 0.79258 0.80005 1.17814 1.20843 1.17766 1.21098 0.89646 0.93710 1.51387 0.93710 1.20456 0.94881 0.93525 0.94792 0.94531 1.23942 0.86788 0.95338 0.97392 1.88960 1.36146 1.19001 1.87309 1.24280 1.00693 0.84590 0.96038 1.23165 0.91354 0.97427 0.85661 0.91454 1.86550 1.65080 1.40383 1.46390 0.92067 0.90673 0.92093 0.86077 0.90734 0.75887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.60 13.96 21.45 0.30 -57.30 14 2 C 0.02 1.23 5.46 84.65 0.46 1.69 14 3 Si 0.93 43.73 24.90 68.60 1.71 45.44 14 4 H -0.25 -11.13 7.11 99.48 0.71 -10.42 14 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 14 6 H -0.25 -11.57 6.42 99.48 0.64 -10.93 14 7 C -0.52 -29.56 8.97 25.60 0.23 -29.33 14 8 H 0.04 2.75 7.63 -2.91 -0.02 2.73 14 9 C -0.02 -0.84 2.34 -10.52 -0.02 -0.87 14 10 H 0.04 1.90 6.91 -2.39 -0.02 1.88 14 11 C 0.04 1.86 5.68 72.49 0.41 2.27 14 12 O -0.39 -15.93 11.65 -148.98 -1.74 -17.67 14 13 C 0.02 0.68 7.37 72.49 0.53 1.22 14 14 C 0.08 3.28 4.13 31.61 0.13 3.41 14 15 H 0.07 2.68 7.46 -2.39 -0.02 2.67 14 16 O -0.58 -20.73 13.30 -148.98 -1.98 -22.71 14 17 H 0.27 15.43 8.31 -92.71 -0.77 14.66 14 18 H 0.08 3.22 6.10 -2.39 -0.01 3.20 14 19 H 0.06 2.73 7.86 -2.38 -0.02 2.71 14 20 H 0.12 3.05 8.08 -2.38 -0.02 3.03 14 21 H 0.07 2.28 8.14 -2.39 -0.02 2.26 14 22 H 0.39 8.92 9.10 -74.06 -0.67 8.25 14 Total: -1.00 -66.68 187.99 0.51 -66.17 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 0.48 Total: 7.69 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: 1.74 Total: -21.61 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.30 Total: -57.30 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -3.72 Total: -40.38 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.71 Total: 45.44 kcal Total: -66.68 0.51 -66.17 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233490.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.432 kcal (2) G-P(sol) polarization free energy of solvation -66.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds