Wall clock time and date at job start Mon Mar 30 2020 01:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 119.99996 * 2 1 4 4 H 1.48498 * 109.46674 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47077 * 299.99772 * 3 2 1 6 6 H 1.48495 * 109.47122 * 60.00068 * 3 2 1 7 7 C 1.37881 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00034 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00074 * 0.02562 * 7 2 1 10 10 N 1.46904 * 110.56505 * 298.77205 * 9 7 2 11 11 C 1.54686 * 110.42508 * 176.06693 * 9 7 2 12 12 C 1.54484 * 103.97695 * 241.25194 * 11 9 7 13 13 O 1.44418 * 104.90071 * 336.14667 * 12 11 9 14 14 C 1.44431 * 105.27922 * 40.45934 * 13 12 11 15 15 H 0.96996 * 120.00162 * 0.02562 * 1 2 3 16 16 H 1.00904 * 110.99405 * 61.22513 * 10 9 7 17 17 H 1.00900 * 110.99795 * 185.17873 * 10 9 7 18 18 H 1.08998 * 110.49150 * 122.66435 * 11 9 7 19 19 H 1.09001 * 110.61018 * 359.89836 * 11 9 7 20 20 H 1.09002 * 110.37173 * 217.26015 * 12 11 9 21 21 H 1.08999 * 110.37313 * 95.03438 * 12 11 9 22 22 H 1.08995 * 110.37120 * 78.31288 * 14 13 12 23 23 H 1.08995 * 110.37610 * 200.65799 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 0.4192 -2.6148 1.2059 11 6 2.2335 -3.6899 -0.0982 12 6 1.8377 -4.3919 -1.4162 13 8 0.4607 -4.0173 -1.6375 14 6 0.3820 -2.6225 -1.2707 15 1 -0.4850 0.8400 -0.0004 16 1 -0.2663 -1.8754 1.2443 17 1 -0.0227 -3.5206 1.2547 18 1 2.1023 -4.3641 0.7480 19 1 3.2629 -3.3348 -0.1488 20 1 1.9246 -5.4734 -1.3110 21 1 2.4633 -4.0398 -2.2364 22 1 0.7847 -1.9974 -2.0677 23 1 -0.6494 -2.3447 -1.0538 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084327176.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:24 Heat of formation + Delta-G solvation = -52.344422 kcal Electronic energy + Delta-G solvation = -9026.178212 eV Core-core repulsion = 7260.027276 eV Total energy + Delta-G solvation = -1766.150936 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 157.084 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -38.38603 -33.87197 -31.32969 -29.14168 -26.70891 -24.59479 -21.70371 -19.24104 -16.59955 -15.28306 -14.63469 -14.34445 -13.99741 -13.65853 -12.62583 -12.00134 -11.46624 -11.10200 -10.87867 -10.52740 -10.49489 -10.24989 -9.48959 -9.17799 -8.86300 -8.63214 -7.02266 -6.15639 -4.17329 3.25783 3.34093 3.38119 4.36003 5.07686 5.15272 5.82225 5.92284 6.05529 6.32812 6.52523 6.66710 6.83726 6.93129 7.02362 7.27108 7.76430 7.81917 8.22939 8.67637 8.97584 9.17943 9.50363 10.95508 Molecular weight = 157.08amu Principal moments of inertia in cm(-1) A = 0.080957 B = 0.020123 C = 0.019357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.779715 B = 1391.142264 C = 1446.189882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.067 3.933 3 Si 0.900 3.100 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.497 4.497 8 H 0.062 0.938 9 C 0.219 3.781 10 N -0.835 5.835 11 C -0.144 4.144 12 C 0.047 3.953 13 O -0.405 6.405 14 C 0.034 3.966 15 H 0.263 0.737 16 H 0.355 0.645 17 H 0.299 0.701 18 H 0.060 0.940 19 H 0.068 0.932 20 H 0.071 0.929 21 H 0.046 0.954 22 H 0.050 0.950 23 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.884 -3.283 -1.265 3.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.135 4.135 3 Si 0.728 3.272 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.536 4.536 8 H 0.080 0.920 9 C 0.127 3.873 10 N -0.366 5.366 11 C -0.183 4.183 12 C -0.030 4.030 13 O -0.325 6.325 14 C -0.044 4.044 15 H 0.073 0.927 16 H 0.172 0.828 17 H 0.108 0.892 18 H 0.079 0.921 19 H 0.087 0.913 20 H 0.089 0.911 21 H 0.064 0.936 22 H 0.068 0.932 23 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.241 -3.161 -0.929 3.985 hybrid contribution -0.243 1.006 -0.636 1.215 sum 1.998 -2.155 -1.566 3.330 Atomic orbital electron populations 1.69729 1.05949 1.26986 1.51055 1.25025 0.95013 0.99398 0.94033 0.86405 0.80063 0.83195 0.77526 1.19757 1.21085 1.20899 1.21076 0.92779 0.89341 1.50398 0.91992 1.19656 0.89432 0.92773 0.85464 1.59300 1.29738 1.05761 1.41820 1.23052 1.00862 0.98212 0.96153 1.23264 0.84351 0.98436 0.96990 1.88950 1.26470 1.28661 1.88412 1.24455 1.01695 0.79115 0.99184 0.92663 0.82783 0.89195 0.92114 0.91291 0.91107 0.93565 0.93209 0.90161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.53 10.74 55.43 0.60 -23.94 14 2 C 0.07 1.81 5.26 -17.82 -0.09 1.72 14 3 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 14 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 14 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 14 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 14 7 C -0.50 -13.53 8.11 -34.44 -0.28 -13.81 14 8 H 0.06 1.68 7.39 -52.49 -0.39 1.29 14 9 C 0.22 5.47 0.90 -131.08 -0.12 5.35 14 10 N -0.84 -20.47 8.87 1.16 0.01 -20.46 14 11 C -0.14 -3.12 6.45 -25.07 -0.16 -3.28 14 12 C 0.05 0.93 7.62 37.94 0.29 1.22 14 13 O -0.41 -9.34 11.65 -35.23 -0.41 -9.75 14 14 C 0.03 0.84 5.92 37.94 0.22 1.06 14 15 H 0.26 6.90 8.31 -40.82 -0.34 6.56 14 16 H 0.36 9.20 7.17 -39.29 -0.28 8.91 14 17 H 0.30 6.66 8.93 -39.29 -0.35 6.31 14 18 H 0.06 1.25 7.93 -51.93 -0.41 0.83 14 19 H 0.07 1.45 7.47 -51.93 -0.39 1.07 14 20 H 0.07 1.19 8.14 -51.93 -0.42 0.77 14 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 14 22 H 0.05 1.29 7.86 -51.93 -0.41 0.89 14 23 H 0.08 2.07 7.86 -51.93 -0.41 1.67 14 LS Contribution 195.59 15.07 2.95 2.95 Total: -1.00 -27.89 195.59 -4.63 -32.53 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -2.62 Total: 10.38 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -0.14 Total: -7.74 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.61 Total: -44.40 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -0.41 Total: -9.75 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 2.95 Total: 2.95 kcal Total: -27.89 -4.63 -32.53 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084327176.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.817 kcal (2) G-P(sol) polarization free energy of solvation -27.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds