Wall clock time and date at job start Mon Mar 30 2020 01:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 119.99996 * 2 1 4 4 H 1.48498 * 109.46674 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47077 * 299.99772 * 3 2 1 6 6 H 1.48495 * 109.47122 * 60.00068 * 3 2 1 7 7 C 1.37881 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00034 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00074 * 0.02562 * 7 2 1 10 10 N 1.46904 * 110.56505 * 298.77205 * 9 7 2 11 11 C 1.54686 * 110.42508 * 176.06693 * 9 7 2 12 12 C 1.54484 * 103.97695 * 241.25194 * 11 9 7 13 13 O 1.44418 * 104.90071 * 336.14667 * 12 11 9 14 14 C 1.44431 * 105.27922 * 40.45934 * 13 12 11 15 15 H 0.96996 * 120.00162 * 0.02562 * 1 2 3 16 16 H 1.00904 * 110.99405 * 61.22513 * 10 9 7 17 17 H 1.00900 * 110.99795 * 185.17873 * 10 9 7 18 18 H 1.08998 * 110.49150 * 122.66435 * 11 9 7 19 19 H 1.09001 * 110.61018 * 359.89836 * 11 9 7 20 20 H 1.09002 * 110.37173 * 217.26015 * 12 11 9 21 21 H 1.08999 * 110.37313 * 95.03438 * 12 11 9 22 22 H 1.08995 * 110.37120 * 78.31288 * 14 13 12 23 23 H 1.08995 * 110.37610 * 200.65799 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 0.4192 -2.6148 1.2059 11 6 2.2335 -3.6899 -0.0982 12 6 1.8377 -4.3919 -1.4162 13 8 0.4607 -4.0173 -1.6375 14 6 0.3820 -2.6225 -1.2707 15 1 -0.4850 0.8400 -0.0004 16 1 -0.2663 -1.8754 1.2443 17 1 -0.0227 -3.5206 1.2547 18 1 2.1023 -4.3641 0.7480 19 1 3.2629 -3.3348 -0.1488 20 1 1.9246 -5.4734 -1.3110 21 1 2.4633 -4.0398 -2.2364 22 1 0.7847 -1.9974 -2.0677 23 1 -0.6494 -2.3447 -1.0538 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084327176.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:24 Heat of formation + Delta-G solvation = -73.264633 kcal Electronic energy + Delta-G solvation = -9027.085380 eV Core-core repulsion = 7260.027276 eV Total energy + Delta-G solvation = -1767.058105 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 157.084 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.20949 -35.80445 -33.31558 -30.90207 -28.65829 -26.60607 -23.43392 -21.15063 -18.57416 -17.14100 -16.52903 -16.16122 -15.84216 -15.54095 -14.51132 -13.88169 -13.31004 -13.04888 -12.76840 -12.35388 -12.26892 -12.01208 -11.43722 -11.03426 -10.72114 -10.65306 -8.96830 -8.18735 -6.27315 1.41251 1.44462 1.54732 2.41789 3.10592 3.32070 4.15927 4.20467 4.42119 4.48220 4.74086 4.88310 5.02294 5.09934 5.19122 5.40507 5.74552 5.92473 6.24546 6.66157 6.97016 7.24938 7.43505 8.90826 Molecular weight = 157.08amu Principal moments of inertia in cm(-1) A = 0.080957 B = 0.020123 C = 0.019357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.779715 B = 1391.142264 C = 1446.189882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.024 3.976 3 Si 0.960 3.040 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.204 3.796 10 N -0.836 5.836 11 C -0.141 4.141 12 C 0.046 3.954 13 O -0.413 6.413 14 C 0.047 3.953 15 H 0.265 0.735 16 H 0.345 0.655 17 H 0.311 0.689 18 H 0.071 0.929 19 H 0.071 0.929 20 H 0.109 0.891 21 H 0.056 0.944 22 H 0.030 0.970 23 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.611 -3.663 -1.323 4.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.176 4.176 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.075 0.925 9 C 0.112 3.888 10 N -0.367 5.367 11 C -0.179 4.179 12 C -0.031 4.031 13 O -0.332 6.332 14 C -0.031 4.031 15 H 0.074 0.926 16 H 0.161 0.839 17 H 0.121 0.879 18 H 0.090 0.910 19 H 0.089 0.911 20 H 0.127 0.873 21 H 0.074 0.926 22 H 0.049 0.951 23 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.977 -3.564 -0.989 4.748 hybrid contribution -0.469 1.077 -0.617 1.327 sum 2.508 -2.487 -1.606 3.880 Atomic orbital electron populations 1.69822 1.06874 1.27634 1.51148 1.25717 0.95839 1.02288 0.93736 0.85475 0.78988 0.79508 0.77416 1.19391 1.20708 1.20797 1.21357 0.92803 0.90793 1.50961 0.92544 1.19787 0.90115 0.93507 0.85398 1.59262 1.29546 1.06133 1.41721 1.23009 1.00073 0.97215 0.97624 1.23495 0.82688 1.00574 0.96311 1.88933 1.28590 1.27307 1.88410 1.24129 1.00456 0.79947 0.98601 0.92609 0.83918 0.87873 0.91013 0.91071 0.87301 0.92550 0.95130 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.96 10.74 21.45 0.23 -49.73 14 2 C 0.02 1.29 5.26 84.65 0.45 1.74 14 3 Si 0.96 42.83 29.54 68.60 2.03 44.85 14 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 14 5 H -0.28 -12.30 7.11 99.48 0.71 -11.60 14 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 14 7 C -0.52 -28.07 8.11 25.60 0.21 -27.86 14 8 H 0.06 3.02 7.39 -2.91 -0.02 3.00 14 9 C 0.20 10.04 0.90 3.86 0.00 10.04 14 10 N -0.84 -40.39 8.87 -150.24 -1.33 -41.72 14 11 C -0.14 -5.79 6.45 31.67 0.20 -5.59 14 12 C 0.05 1.69 7.62 72.49 0.55 2.24 14 13 O -0.41 -18.32 11.65 -148.98 -1.74 -20.06 14 14 C 0.05 2.34 5.92 72.49 0.43 2.77 14 15 H 0.26 13.81 8.31 -92.71 -0.77 13.04 14 16 H 0.35 17.87 7.17 -89.69 -0.64 17.22 14 17 H 0.31 13.51 8.93 -89.69 -0.80 12.71 14 18 H 0.07 2.75 7.93 -2.39 -0.02 2.74 14 19 H 0.07 2.86 7.47 -2.39 -0.02 2.85 14 20 H 0.11 3.21 8.14 -2.39 -0.02 3.19 14 21 H 0.06 1.97 8.14 -2.39 -0.02 1.95 14 22 H 0.03 1.59 7.86 -2.39 -0.02 1.58 14 23 H 0.06 3.28 7.86 -2.39 -0.02 3.26 14 Total: -1.00 -57.00 195.59 0.80 -56.19 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: -0.23 Total: 27.12 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: 1.84 Total: -16.65 kcal Atomic # 7 Polarization: -90.35 SS G_CDS: -1.10 Total: -91.46 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -1.74 Total: -20.06 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -57.00 0.80 -56.19 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084327176.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.070 kcal (2) G-P(sol) polarization free energy of solvation -56.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds