Wall clock time and date at job start Mon Mar 30 2020 01:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99863 * 2 1 4 4 H 1.48496 * 109.47248 * 274.49357 * 3 2 1 5 5 H 1.48500 * 109.46954 * 34.49776 * 3 2 1 6 6 H 1.48500 * 109.46866 * 154.49416 * 3 2 1 7 7 C 1.37878 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00113 * 4.65747 * 7 2 1 9 9 C 1.50705 * 119.99939 * 184.66515 * 7 2 1 10 10 C 1.52995 * 115.55383 * 84.81242 * 9 7 2 11 11 O 1.42905 * 109.47124 * 65.17519 * 10 9 7 12 12 N 1.46302 * 113.99730 * 184.97075 * 11 10 9 13 13 C 1.53003 * 117.49510 * 230.48227 * 9 7 2 14 14 C 1.52999 * 117.49503 * 299.13952 * 9 7 2 15 15 H 0.96998 * 120.00285 * 0.02562 * 1 2 3 16 16 H 1.09002 * 109.46791 * 305.17463 * 10 9 7 17 17 H 1.08997 * 109.47246 * 185.17820 * 10 9 7 18 18 H 1.00903 * 111.00146 * 55.00518 * 12 11 10 19 19 H 1.00901 * 110.99543 * 178.95332 * 12 11 10 20 20 H 1.08997 * 117.49942 * 214.99701 * 13 9 7 21 21 H 1.08996 * 117.49731 * 0.02618 * 13 9 7 22 22 H 1.08998 * 117.50386 * 359.97438 * 14 9 7 23 23 H 1.09004 * 117.49579 * 144.97449 * 14 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4016 2.1014 -1.3957 5 1 1.4973 2.6234 0.7930 6 1 3.5909 1.4147 0.6029 7 6 2.0045 -1.1940 0.0005 8 1 1.4673 -2.1279 -0.0750 9 6 3.5078 -1.1961 0.1067 10 6 4.0692 -1.1276 1.5283 11 8 3.7117 -2.3146 2.2393 12 7 4.1013 -2.3035 3.6494 13 6 4.2875 -2.0179 -0.9218 14 6 4.2950 -0.4891 -0.9985 15 1 -0.4850 0.8400 -0.0004 16 1 3.6558 -0.2588 2.0406 17 1 5.1550 -1.0422 1.4865 18 1 3.7301 -1.4923 4.1208 19 1 3.8128 -3.1533 4.1108 20 1 5.2003 -2.5096 -0.5857 21 1 3.7131 -2.5566 -1.6754 22 1 3.7256 -0.0228 -1.8025 23 1 5.2125 0.0253 -0.7126 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086335329.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:29 Heat of formation + Delta-G solvation = 0.825245 kcal Electronic energy + Delta-G solvation = -8748.607651 eV Core-core repulsion = 6984.762324 eV Total energy + Delta-G solvation = -1763.845326 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 157.084 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -39.10216 -36.78551 -34.26369 -30.84172 -28.16527 -26.57250 -23.30972 -20.96050 -18.53211 -17.39243 -17.18568 -16.58552 -15.79157 -15.42508 -14.74900 -14.04132 -13.75125 -13.03224 -12.91944 -12.19590 -11.96330 -11.70410 -11.50246 -11.00252 -10.57402 -10.32735 -9.83531 -8.30730 -6.38378 1.36088 1.37725 1.51831 1.91656 2.36646 3.02814 3.24106 4.12748 4.29466 4.32467 4.53166 4.56653 4.81536 4.84320 5.06659 5.32216 5.46772 5.68316 6.02610 6.24385 6.35617 6.69561 7.30194 8.85555 Molecular weight = 157.08amu Principal moments of inertia in cm(-1) A = 0.048629 B = 0.023863 C = 0.020834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.644639 B = 1173.074302 C = 1343.613611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.015 3.985 3 Si 0.944 3.056 4 H -0.267 1.267 5 H -0.295 1.295 6 H -0.227 1.227 7 C -0.485 4.485 8 H 0.022 0.978 9 C -0.036 4.036 10 C 0.110 3.890 11 O -0.258 6.258 12 N -0.676 5.676 13 C -0.164 4.164 14 C -0.176 4.176 15 H 0.266 0.734 16 H 0.036 0.964 17 H 0.056 0.944 18 H 0.344 0.656 19 H 0.372 0.628 20 H 0.103 0.897 21 H 0.077 0.923 22 H 0.082 0.918 23 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.755 1.225 3.430 10.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.182 4.182 3 Si 0.767 3.233 4 H -0.193 1.193 5 H -0.222 1.222 6 H -0.150 1.150 7 C -0.523 4.523 8 H 0.040 0.960 9 C -0.038 4.038 10 C 0.033 3.967 11 O -0.271 6.271 12 N -0.244 5.244 13 C -0.201 4.201 14 C -0.213 4.213 15 H 0.075 0.925 16 H 0.054 0.946 17 H 0.074 0.926 18 H 0.155 0.845 19 H 0.186 0.814 20 H 0.121 0.879 21 H 0.095 0.905 22 H 0.100 0.900 23 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.260 1.175 3.085 10.778 hybrid contribution -1.456 0.649 0.304 1.623 sum 8.804 1.824 3.389 9.609 Atomic orbital electron populations 1.70069 1.08514 1.28184 1.52424 1.25947 0.95362 1.03262 0.93626 0.85805 0.80509 0.77824 0.79114 1.19256 1.22208 1.14952 1.20394 0.89529 0.92556 1.49818 0.95951 1.19294 0.92293 1.04408 0.87809 1.22111 0.97025 0.86344 0.91259 1.90732 1.83245 1.38902 1.14239 1.64370 1.60115 1.09683 0.90197 1.22861 1.01689 0.93047 1.02518 1.23059 1.01704 0.95425 1.01139 0.92492 0.94570 0.92629 0.84505 0.81446 0.87869 0.90451 0.89997 0.87270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.30 13.96 21.45 0.30 -60.00 14 2 C 0.01 0.87 5.47 84.66 0.46 1.33 14 3 Si 0.94 43.68 24.95 68.60 1.71 45.39 14 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 14 5 H -0.30 -13.64 7.11 99.48 0.71 -12.94 14 6 H -0.23 -9.32 5.69 99.48 0.57 -8.76 14 7 C -0.49 -28.49 9.36 25.60 0.24 -28.25 14 8 H 0.02 1.50 8.06 -2.91 -0.02 1.48 14 9 C -0.04 -1.68 1.03 -52.93 -0.05 -1.73 14 10 C 0.11 4.68 5.81 71.98 0.42 5.09 14 11 O -0.26 -11.18 11.90 -50.17 -0.60 -11.77 14 12 N -0.68 -21.39 10.80 37.02 0.40 -20.99 14 13 C -0.16 -6.63 9.96 30.62 0.30 -6.32 14 14 C -0.18 -6.98 7.32 30.62 0.22 -6.75 14 15 H 0.27 15.71 8.31 -92.71 -0.77 14.94 14 16 H 0.04 1.55 7.06 -2.39 -0.02 1.53 14 17 H 0.06 2.06 8.09 -2.39 -0.02 2.04 14 18 H 0.34 9.65 9.16 -89.69 -0.82 8.82 14 19 H 0.37 9.67 9.25 -89.69 -0.83 8.84 14 20 H 0.10 3.59 8.14 -2.39 -0.02 3.57 14 21 H 0.08 3.23 8.14 -2.39 -0.02 3.21 14 22 H 0.08 3.38 7.14 -2.39 -0.02 3.36 14 23 H 0.11 3.59 8.14 -2.39 -0.02 3.57 14 Total: -1.00 -68.31 201.94 2.83 -65.47 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -0.58 Total: 18.53 kcal Atomic # 6 Polarization: -38.22 SS G_CDS: 1.60 Total: -36.63 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: 0.70 Total: -80.99 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -0.60 Total: -11.77 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.71 Total: 45.39 kcal Total: -68.31 2.83 -65.47 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086335329.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.300 kcal (2) G-P(sol) polarization free energy of solvation -68.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds