Wall clock time and date at job start Mon Mar 30 2020 01:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 119.99881 * 2 1 4 4 H 1.48506 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00145 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00138 * 3 2 1 7 7 C 1.38809 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99940 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99795 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.45972 * 327.60025 * 10 9 7 12 12 C 1.54512 * 110.50733 * 204.99505 * 10 9 7 13 13 C 1.54479 * 104.06510 * 241.35332 * 12 10 9 14 14 O 1.44428 * 104.80331 * 23.97896 * 13 12 10 15 15 C 1.44424 * 105.27397 * 319.49103 * 14 13 12 16 16 H 0.97004 * 120.00335 * 180.02562 * 1 2 3 17 17 H 0.96997 * 120.00183 * 359.97438 * 9 7 2 18 18 H 1.09001 * 110.51518 * 0.02562 * 12 10 9 19 19 H 1.09002 * 110.51315 * 122.57434 * 12 10 9 20 20 H 1.09001 * 110.37552 * 142.81292 * 13 12 10 21 21 H 1.08996 * 110.37454 * 265.15183 * 13 12 10 22 22 H 1.09007 * 110.37085 * 281.67596 * 15 14 13 23 23 H 1.09004 * 110.37684 * 159.34192 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 1.2125 6 1 1.8914 2.3965 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 1 2.9958 -3.5552 -0.5480 12 6 1.1934 -4.7811 -0.6143 13 6 1.0350 -5.8013 0.5348 14 8 1.2307 -5.0317 1.7412 15 6 2.3199 -4.1307 1.4452 16 1 -0.4851 -0.8401 0.0004 17 1 0.3556 -2.3881 -0.0016 18 1 0.2210 -4.3929 -0.9176 19 1 1.7035 -5.2355 -1.4636 20 1 0.0360 -6.2371 0.5205 21 1 1.7915 -6.5821 0.4560 22 1 3.2735 -4.6552 1.5060 23 1 2.3079 -3.2829 2.1302 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087787230.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:48 Heat of formation + Delta-G solvation = -61.088583 kcal Electronic energy + Delta-G solvation = -8712.739428 eV Core-core repulsion = 6946.209317 eV Total energy + Delta-G solvation = -1766.530111 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 157.084 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -40.27216 -36.52530 -33.51892 -31.09005 -28.93420 -25.70461 -23.50062 -21.79823 -19.50087 -17.51538 -17.13216 -16.41015 -15.93713 -15.53787 -15.04557 -13.92231 -13.03992 -12.86781 -12.64036 -12.47633 -12.36119 -11.86441 -11.80683 -11.28414 -11.14746 -10.67364 -9.15720 -8.43927 -5.38375 1.57755 1.69644 1.81208 2.69403 3.09384 3.38067 3.63697 3.80848 4.09350 4.25190 4.32250 4.50723 4.74491 4.79683 4.85581 5.08963 5.13780 5.56894 5.90358 6.44508 7.04068 7.93603 8.06514 9.07996 Molecular weight = 157.08amu Principal moments of inertia in cm(-1) A = 0.108999 B = 0.014357 C = 0.013940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 256.821441 B = 1949.768954 C = 2008.095309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.105 4.105 3 Si 1.135 2.865 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.337 4.337 8 H 0.072 0.928 9 N -0.744 5.744 10 C 0.138 3.862 11 H 0.069 0.931 12 C -0.157 4.157 13 C 0.046 3.954 14 O -0.405 6.405 15 C 0.027 3.973 16 H 0.243 0.757 17 H 0.358 0.642 18 H 0.060 0.940 19 H 0.102 0.898 20 H 0.100 0.900 21 H 0.084 0.916 22 H 0.077 0.923 23 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.243 -9.129 -0.755 10.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.296 4.296 3 Si 0.960 3.040 4 H -0.193 1.193 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.468 4.468 8 H 0.090 0.910 9 N -0.385 5.385 10 C 0.029 3.971 11 H 0.087 0.913 12 C -0.196 4.196 13 C -0.031 4.031 14 O -0.325 6.325 15 C -0.052 4.052 16 H 0.054 0.946 17 H 0.191 0.809 18 H 0.079 0.921 19 H 0.121 0.879 20 H 0.118 0.882 21 H 0.102 0.898 22 H 0.095 0.905 23 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.233 -7.509 -0.573 9.171 hybrid contribution -0.325 -1.539 -0.088 1.575 sum 4.908 -9.048 -0.660 10.315 Atomic orbital electron populations 1.70929 1.07355 1.27921 1.56219 1.27312 0.97074 1.04927 1.00315 0.82526 0.73805 0.71181 0.76506 1.19303 1.21894 1.21660 1.20525 0.92558 0.86930 1.46802 0.91017 1.42716 1.04575 1.01716 1.89530 1.21848 0.95527 0.85652 0.94095 0.91315 1.23228 1.00551 0.96115 0.99662 1.23562 1.03092 0.93679 0.82730 1.89050 1.54203 1.53136 1.36107 1.24196 0.89902 0.92378 0.98756 0.94631 0.80936 0.92147 0.87915 0.88176 0.89787 0.90501 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.65 13.70 21.65 0.30 -62.36 14 2 C -0.11 -6.22 5.50 84.86 0.47 -5.76 14 3 Si 1.14 52.52 29.92 68.60 2.05 54.57 14 4 H -0.27 -11.11 7.11 99.48 0.71 -10.41 14 5 H -0.29 -13.39 7.11 99.48 0.71 -12.69 14 6 H -0.29 -13.18 7.11 99.48 0.71 -12.47 14 7 C -0.34 -19.24 9.96 84.03 0.84 -18.40 14 8 H 0.07 3.94 7.83 -2.91 -0.02 3.91 14 9 N -0.74 -38.80 5.13 -318.13 -1.63 -40.43 14 10 C 0.14 5.59 3.78 46.01 0.17 5.77 14 11 H 0.07 2.70 8.09 -2.39 -0.02 2.68 14 12 C -0.16 -5.03 6.85 31.61 0.22 -4.81 14 13 C 0.05 1.30 7.63 72.48 0.55 1.85 14 14 O -0.41 -15.35 11.65 -148.98 -1.74 -17.09 14 15 C 0.03 1.03 7.35 72.49 0.53 1.56 14 16 H 0.24 15.68 6.78 -92.70 -0.63 15.05 14 17 H 0.36 19.85 6.41 -92.71 -0.59 19.26 14 18 H 0.06 2.12 7.70 -2.39 -0.02 2.10 14 19 H 0.10 2.64 8.14 -2.39 -0.02 2.62 14 20 H 0.10 2.48 8.14 -2.39 -0.02 2.46 14 21 H 0.08 1.87 8.14 -2.39 -0.02 1.85 14 22 H 0.08 2.40 8.14 -2.38 -0.02 2.38 14 23 H 0.06 2.80 8.06 -2.38 -0.02 2.78 14 Total: -1.00 -68.07 200.22 2.50 -65.57 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.74 Total: 19.53 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: 2.78 Total: -19.79 kcal Atomic # 7 Polarization: -101.45 SS G_CDS: -1.33 Total: -102.79 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -1.74 Total: -17.09 kcal Atomic # 14 Polarization: 52.52 SS G_CDS: 2.05 Total: 54.57 kcal Total: -68.07 2.50 -65.57 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087787230.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.477 kcal (2) G-P(sol) polarization free energy of solvation -68.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds