Wall clock time and date at job start Mon Mar 30 2020 01:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86804 * 119.99657 * 2 1 4 4 H 1.48499 * 109.47075 * 269.99719 * 3 2 1 5 5 H 1.48502 * 109.47230 * 30.00215 * 3 2 1 6 6 H 1.48498 * 109.47302 * 149.99895 * 3 2 1 7 7 C 1.38809 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00224 * 0.02562 * 7 2 1 9 9 N 1.36941 * 120.00151 * 180.02562 * 7 2 1 10 10 C 1.46498 * 120.00220 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.45508 * 32.39960 * 10 9 7 12 12 C 1.54510 * 110.51072 * 154.99781 * 10 9 7 13 13 C 1.54477 * 104.18108 * 118.71436 * 12 10 9 14 14 O 1.44642 * 104.69773 * 336.19290 * 13 12 10 15 15 C 1.44415 * 105.37338 * 40.34325 * 14 13 12 16 16 H 0.96998 * 120.00537 * 0.02562 * 1 2 3 17 17 H 0.97002 * 119.99734 * 359.97438 * 9 7 2 18 18 H 1.09002 * 110.51305 * 237.42967 * 12 10 9 19 19 H 1.08994 * 110.51141 * 0.02562 * 12 10 9 20 20 H 1.09006 * 110.37498 * 94.92285 * 13 12 10 21 21 H 1.09000 * 110.37254 * 217.25804 * 13 12 10 22 22 H 1.08998 * 110.37627 * 200.73568 * 15 14 13 23 23 H 1.09004 * 110.46797 * 78.44683 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4474 2.6527 0.7001 6 1 3.5476 1.4404 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2020 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5562 -3.2316 -0.5465 12 6 5.5190 -2.2835 -0.6100 13 6 6.4829 -2.6582 0.5375 14 8 5.7152 -2.4480 1.7452 15 6 4.3901 -2.9387 1.4468 16 1 -0.4851 0.8400 -0.0004 17 1 3.8646 -0.3619 0.0007 18 1 5.6584 -2.9520 -1.4596 19 1 5.6695 -1.2470 -0.9116 20 1 6.7820 -3.7033 0.4559 21 1 7.3590 -2.0098 0.5241 22 1 3.6618 -2.5057 2.1324 23 1 4.3646 -4.0268 1.5049 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087787232.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:49 Heat of formation + Delta-G solvation = -33.562851 kcal Electronic energy + Delta-G solvation = -8722.598797 eV Core-core repulsion = 6957.262290 eV Total energy + Delta-G solvation = -1765.336506 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 157.084 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -38.77898 -34.41773 -31.68627 -29.88526 -27.72447 -23.47396 -21.95195 -20.13255 -17.68780 -15.84636 -15.56449 -14.83514 -14.33504 -13.41852 -12.83148 -12.51541 -12.01925 -11.21355 -11.06784 -10.80845 -10.58605 -10.56297 -10.11292 -9.62562 -9.47407 -8.88132 -7.29017 -5.80260 -3.16446 3.37744 3.42794 3.45204 4.48188 4.57721 5.15987 5.17821 5.38322 5.49849 5.60578 5.83972 6.00247 6.04772 6.11090 6.34429 6.51433 6.69801 7.29983 7.95537 8.39113 9.17009 9.89749 10.09661 11.37707 Molecular weight = 157.08amu Principal moments of inertia in cm(-1) A = 0.081434 B = 0.017087 C = 0.015851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.754013 B = 1638.245081 C = 1765.995235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.008 3.992 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.252 4.252 8 H 0.091 0.909 9 N -0.740 5.740 10 C 0.153 3.847 11 H 0.071 0.929 12 C -0.166 4.166 13 C 0.045 3.955 14 O -0.382 6.382 15 C 0.019 3.981 16 H 0.260 0.740 17 H 0.363 0.637 18 H 0.074 0.926 19 H 0.074 0.926 20 H 0.052 0.948 21 H 0.082 0.918 22 H 0.097 0.903 23 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.719 -4.070 -0.436 11.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.381 4.381 8 H 0.109 0.891 9 N -0.382 5.382 10 C 0.042 3.958 11 H 0.089 0.911 12 C -0.205 4.205 13 C -0.032 4.032 14 O -0.301 6.301 15 C -0.061 4.061 16 H 0.070 0.930 17 H 0.197 0.803 18 H 0.093 0.907 19 H 0.093 0.907 20 H 0.070 0.930 21 H 0.100 0.900 22 H 0.115 0.885 23 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.519 -4.027 -0.248 11.266 hybrid contribution 0.440 1.108 -0.175 1.205 sum 10.958 -2.919 -0.422 11.348 Atomic orbital electron populations 1.69696 1.05133 1.25974 1.57110 1.24668 0.95238 0.97297 1.01659 0.86557 0.79439 0.84844 0.77830 1.21008 1.21610 1.20086 1.19110 0.80529 0.94858 1.43627 0.89078 1.42827 1.04011 1.01747 1.89649 1.21533 0.90956 0.90159 0.93109 0.91069 1.23282 0.96196 1.02620 0.98376 1.23353 0.95089 0.99714 0.85074 1.89101 1.23039 1.83934 1.34025 1.24388 0.84143 0.97060 1.00504 0.92965 0.80315 0.90729 0.90701 0.92972 0.90001 0.88453 0.93559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.36 13.97 55.49 0.78 -28.58 14 2 C 0.01 0.22 5.50 -17.44 -0.10 0.13 14 3 Si 0.88 22.41 27.74 -169.99 -4.71 17.69 14 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 14 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 14 6 H -0.27 -6.70 6.52 56.52 0.37 -6.33 14 7 C -0.25 -7.15 10.44 -15.06 -0.16 -7.31 14 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 14 9 N -0.74 -17.97 4.94 -51.91 -0.26 -18.22 14 10 C 0.15 3.02 3.78 -66.36 -0.25 2.77 14 11 H 0.07 1.38 8.09 -51.93 -0.42 0.96 14 12 C -0.17 -2.64 6.84 -25.16 -0.17 -2.81 14 13 C 0.04 0.66 7.65 37.93 0.29 0.96 14 14 O -0.38 -7.18 11.65 -35.23 -0.41 -7.59 14 15 C 0.02 0.35 7.36 37.93 0.28 0.63 14 16 H 0.26 7.80 8.31 -40.82 -0.34 7.46 14 17 H 0.36 8.79 5.44 -40.82 -0.22 8.57 14 18 H 0.07 1.00 8.14 -51.93 -0.42 0.58 14 19 H 0.07 1.23 7.70 -51.93 -0.40 0.83 14 20 H 0.05 0.66 8.14 -51.93 -0.42 0.24 14 21 H 0.08 1.06 8.14 -51.93 -0.42 0.64 14 22 H 0.10 2.03 8.07 -51.93 -0.42 1.61 14 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 14 LS Contribution 198.82 15.07 3.00 3.00 Total: -1.00 -31.39 198.82 -4.46 -35.85 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -2.74 Total: 3.50 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -0.11 Total: -5.64 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.52 Total: -46.81 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -0.41 Total: -7.59 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.71 Total: 17.69 kcal Total LS contribution 3.00 Total: 3.00 kcal Total: -31.39 -4.46 -35.85 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087787232.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.290 kcal (2) G-P(sol) polarization free energy of solvation -31.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds