Wall clock time and date at job start Mon Mar 30 2020 01:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86804 * 119.99657 * 2 1 4 4 H 1.48499 * 109.47075 * 269.99719 * 3 2 1 5 5 H 1.48502 * 109.47230 * 30.00215 * 3 2 1 6 6 H 1.48498 * 109.47302 * 149.99895 * 3 2 1 7 7 C 1.38809 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00224 * 0.02562 * 7 2 1 9 9 N 1.36941 * 120.00151 * 180.02562 * 7 2 1 10 10 C 1.46498 * 120.00220 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.45508 * 32.39960 * 10 9 7 12 12 C 1.54510 * 110.51072 * 154.99781 * 10 9 7 13 13 C 1.54477 * 104.18108 * 118.71436 * 12 10 9 14 14 O 1.44642 * 104.69773 * 336.19290 * 13 12 10 15 15 C 1.44415 * 105.37338 * 40.34325 * 14 13 12 16 16 H 0.96998 * 120.00537 * 0.02562 * 1 2 3 17 17 H 0.97002 * 119.99734 * 359.97438 * 9 7 2 18 18 H 1.09002 * 110.51305 * 237.42967 * 12 10 9 19 19 H 1.08994 * 110.51141 * 0.02562 * 12 10 9 20 20 H 1.09006 * 110.37498 * 94.92285 * 13 12 10 21 21 H 1.09000 * 110.37254 * 217.25804 * 13 12 10 22 22 H 1.08998 * 110.37627 * 200.73568 * 15 14 13 23 23 H 1.09004 * 110.46797 * 78.44683 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4474 2.6527 0.7001 6 1 3.5476 1.4404 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2020 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5562 -3.2316 -0.5465 12 6 5.5190 -2.2835 -0.6100 13 6 6.4829 -2.6582 0.5375 14 8 5.7152 -2.4480 1.7452 15 6 4.3901 -2.9387 1.4468 16 1 -0.4851 0.8400 -0.0004 17 1 3.8646 -0.3619 0.0007 18 1 5.6584 -2.9520 -1.4596 19 1 5.6695 -1.2470 -0.9116 20 1 6.7820 -3.7033 0.4559 21 1 7.3590 -2.0098 0.5241 22 1 3.6618 -2.5057 2.1324 23 1 4.3646 -4.0268 1.5049 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087787232.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:49 Heat of formation + Delta-G solvation = -57.103097 kcal Electronic energy + Delta-G solvation = -8723.619578 eV Core-core repulsion = 6957.262290 eV Total energy + Delta-G solvation = -1766.357288 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 157.084 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -40.19855 -36.29903 -33.67324 -31.45824 -29.28960 -25.45465 -23.32597 -21.75268 -19.76125 -17.35788 -17.00930 -16.44944 -16.09840 -15.10935 -14.79744 -14.09422 -13.76108 -13.03436 -12.55085 -12.43644 -12.25501 -12.17347 -11.83592 -11.68962 -11.13297 -10.65869 -9.33011 -8.05923 -5.39881 1.36577 1.39234 1.46700 2.45853 3.12959 3.29202 3.54063 3.86020 4.14864 4.31831 4.39559 4.56494 4.81775 4.87206 4.94488 5.15895 5.20913 5.73663 5.94321 6.19793 7.03509 7.79803 7.98229 9.15246 Molecular weight = 157.08amu Principal moments of inertia in cm(-1) A = 0.081434 B = 0.017087 C = 0.015851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.754013 B = 1638.245081 C = 1765.995235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.061 4.061 3 Si 0.954 3.046 4 H -0.274 1.274 5 H -0.295 1.295 6 H -0.258 1.258 7 C -0.238 4.238 8 H 0.062 0.938 9 N -0.746 5.746 10 C 0.137 3.863 11 H 0.071 0.929 12 C -0.158 4.158 13 C 0.043 3.957 14 O -0.404 6.404 15 C 0.026 3.974 16 H 0.259 0.741 17 H 0.365 0.635 18 H 0.104 0.896 19 H 0.070 0.930 20 H 0.081 0.919 21 H 0.103 0.897 22 H 0.067 0.933 23 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.087 -4.132 -0.803 13.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.252 4.252 3 Si 0.781 3.219 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.183 1.183 7 C -0.369 4.369 8 H 0.080 0.920 9 N -0.389 5.389 10 C 0.028 3.972 11 H 0.089 0.911 12 C -0.196 4.196 13 C -0.033 4.033 14 O -0.324 6.324 15 C -0.053 4.053 16 H 0.068 0.932 17 H 0.198 0.802 18 H 0.122 0.878 19 H 0.089 0.911 20 H 0.099 0.901 21 H 0.121 0.879 22 H 0.085 0.915 23 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.947 -4.127 -0.617 13.603 hybrid contribution -0.266 0.995 -0.065 1.032 sum 12.682 -3.132 -0.682 13.081 Atomic orbital electron populations 1.69868 1.07047 1.26773 1.59450 1.25479 0.96096 1.01201 1.02468 0.85429 0.78457 0.79798 0.78217 1.20015 1.22126 1.18343 1.19106 0.82519 0.93701 1.41558 0.92013 1.42859 1.02545 1.03651 1.89825 1.21868 0.92835 0.88233 0.94246 0.91142 1.23246 0.93447 1.03256 0.99652 1.23629 0.94795 1.02093 0.82762 1.89077 1.22917 1.84334 1.36073 1.24168 0.84061 0.98433 0.98687 0.93233 0.80164 0.87772 0.91144 0.90110 0.87857 0.91473 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.23 13.97 21.65 0.30 -62.93 14 2 C -0.06 -3.61 5.50 84.86 0.47 -3.15 14 3 Si 0.95 46.30 27.74 68.60 1.90 48.20 14 4 H -0.27 -12.81 7.11 99.48 0.71 -12.11 14 5 H -0.29 -14.44 7.11 99.48 0.71 -13.73 14 6 H -0.26 -11.69 6.52 99.48 0.65 -11.04 14 7 C -0.24 -13.67 10.44 84.03 0.88 -12.79 14 8 H 0.06 3.83 8.06 -2.91 -0.02 3.80 14 9 N -0.75 -35.48 4.94 -318.15 -1.57 -37.05 14 10 C 0.14 5.16 3.78 46.01 0.17 5.34 14 11 H 0.07 2.65 8.09 -2.39 -0.02 2.63 14 12 C -0.16 -4.45 6.84 31.61 0.22 -4.23 14 13 C 0.04 1.10 7.65 72.48 0.55 1.66 14 14 O -0.40 -14.12 11.65 -148.98 -1.74 -15.86 14 15 C 0.03 0.93 7.36 72.48 0.53 1.46 14 16 H 0.26 15.87 8.31 -92.71 -0.77 15.10 14 17 H 0.36 16.97 5.44 -92.71 -0.50 16.47 14 18 H 0.10 2.33 8.14 -2.39 -0.02 2.31 14 19 H 0.07 2.07 7.70 -2.39 -0.02 2.05 14 20 H 0.08 1.63 8.14 -2.38 -0.02 1.61 14 21 H 0.10 2.21 8.14 -2.39 -0.02 2.19 14 22 H 0.07 2.80 8.07 -2.39 -0.02 2.78 14 23 H 0.07 2.24 8.14 -2.38 -0.02 2.22 14 Total: -1.00 -67.42 198.82 2.35 -65.07 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.63 Total: 14.29 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 2.82 Total: -11.72 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -1.27 Total: -99.98 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -1.74 Total: -15.86 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.90 Total: 48.20 kcal Total: -67.42 2.35 -65.07 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087787232.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.968 kcal (2) G-P(sol) polarization free energy of solvation -67.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds