Wall clock time and date at job start Mon Mar 30 2020 01:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27947 * 1 3 3 Si 1.86793 * 120.00364 * 2 1 4 4 H 1.48506 * 109.47205 * 270.00224 * 3 2 1 5 5 H 1.48502 * 109.47094 * 29.99725 * 3 2 1 6 6 H 1.48500 * 109.47299 * 150.00034 * 3 2 1 7 7 C 1.50708 * 119.99638 * 180.02562 * 2 1 3 8 8 P 1.90824 * 111.98438 * 191.89977 * 7 2 1 9 9 C 1.65241 * 104.34219 * 243.20812 * 8 7 2 10 10 N 1.37164 * 103.27285 * 359.97438 * 9 8 7 11 11 C 1.44801 * 123.92468 * 0.02562 * 10 9 8 12 12 H 1.08999 * 108.95824 * 120.70885 * 11 10 9 13 13 N 1.46900 * 108.95399 * 239.29366 * 11 10 9 14 14 H 0.97000 * 119.99804 * 359.97438 * 1 2 3 15 15 H 1.09000 * 111.72880 * 318.44884 * 7 2 1 16 16 H 1.08001 * 128.36119 * 179.97438 * 9 8 7 17 17 H 0.97006 * 118.03544 * 180.02562 * 10 9 8 18 18 H 1.00903 * 110.99946 * 302.64887 * 13 11 10 19 19 H 1.00898 * 111.00097 * 66.60807 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2795 0.0000 0.0000 3 14 2.2135 1.6176 0.0000 4 1 2.4610 2.0463 -1.4001 5 1 1.4110 2.6526 0.7000 6 1 3.5111 1.4400 0.7000 7 6 2.0329 -1.3052 -0.0006 8 15 3.8896 -1.0584 0.3644 9 6 4.6487 -1.5692 -1.0116 10 7 3.6094 -1.9508 -1.8214 11 6 2.2153 -1.8724 -1.4381 12 1 1.6901 -1.2275 -2.1426 13 7 1.6276 -3.2174 -1.4982 14 1 -0.4850 0.8401 0.0004 15 1 1.5784 -2.0338 0.6707 16 1 5.7076 -1.5960 -1.2224 17 1 3.8212 -2.2937 -2.7038 18 1 1.7290 -3.6154 -2.4198 19 1 2.0318 -3.8203 -0.7974 RHF calculation, no. of doubly occupied orbitals= 25 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104598828.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:52 Heat of formation + Delta-G solvation = 75.588860 kcal Electronic energy + Delta-G solvation = -7101.799251 eV Core-core repulsion = 5622.276021 eV Total energy + Delta-G solvation = -1479.523229 eV No. of doubly occupied orbitals = 25 Molecular weight (most abundant/longest-lived isotopes) = 159.038 amu Computer time = 0.05 seconds Orbital eigenvalues (eV) -39.65828 -36.61947 -33.94726 -29.97128 -26.69191 -23.49704 -20.74090 -19.52161 -18.16380 -17.49956 -17.06242 -16.06792 -15.55428 -14.81992 -14.12502 -13.94266 -12.87728 -12.66466 -12.23965 -11.74423 -11.55418 -10.55766 -10.06525 -9.64397 -8.46496 0.03786 0.61286 1.07802 1.22190 1.55591 1.68460 1.83420 2.16566 2.45916 3.23593 3.28864 3.61279 4.03105 4.12591 4.71554 4.87393 5.23720 5.64393 5.95508 6.14224 6.76680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.650 5.650 2 C 0.006 3.994 3 Si 0.945 3.055 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.180 1.180 7 C -0.036 4.036 8 P -0.407 5.407 9 C 0.197 3.803 10 N -0.709 5.709 11 C 0.300 3.700 12 H 0.095 0.905 13 N -0.832 5.832 14 H 0.346 0.654 15 H 0.106 0.894 16 H 0.232 0.768 17 H 0.399 0.601 18 H 0.357 0.643 19 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.907 -1.227 -3.971 5.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.264 5.264 2 C -0.241 4.241 3 Si 0.761 3.239 4 H -0.184 1.184 5 H -0.187 1.187 6 H -0.100 1.100 7 C -0.038 4.038 8 P -0.448 5.448 9 C 0.085 3.915 10 N -0.337 5.337 11 C 0.104 3.896 12 H 0.113 0.887 13 N -0.367 5.367 14 H 0.163 0.837 15 H 0.123 0.877 16 H 0.246 0.754 17 H 0.233 0.767 18 H 0.172 0.828 19 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.566 -0.947 -3.937 4.794 hybrid contribution 0.276 -0.575 -2.036 2.133 sum 2.841 -1.522 -5.973 6.787 Atomic orbital electron populations 1.68185 1.10860 1.38036 1.09338 1.30126 0.95922 1.06530 0.91569 0.85300 0.84217 0.72637 0.81769 1.18351 1.18747 1.10014 1.24919 0.91822 0.93631 0.93472 1.87371 0.97450 1.47481 1.12539 1.31584 0.94194 0.76753 0.89000 1.47426 1.06616 1.60597 1.19072 1.22044 0.77360 0.92504 0.97692 0.88740 1.59427 1.61510 1.04094 1.11654 0.83720 0.87703 0.75428 0.76705 0.82776 0.83116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -4.10 13.82 24.11 0.33 -3.77 13 2 C 0.01 0.02 4.98 88.68 0.44 0.47 13 3 Si 0.95 2.34 27.65 68.60 1.90 4.23 13 4 H -0.26 -0.87 7.11 99.48 0.71 -0.16 13 5 H -0.26 -1.08 7.11 99.48 0.71 -0.38 13 6 H -0.18 -0.50 6.15 99.48 0.61 0.11 13 7 C -0.04 -0.10 4.04 30.75 0.12 0.02 13 8 P -0.41 -0.55 18.85 -40.88 -0.77 -1.32 13 9 C 0.20 -1.28 12.68 129.41 1.64 0.36 13 10 N -0.71 5.09 5.38 -338.52 -1.82 3.27 13 11 C 0.30 -0.54 4.34 130.95 0.57 0.03 13 12 H 0.10 -0.03 7.73 -2.39 -0.02 -0.04 13 13 N -0.83 2.40 9.34 -175.35 -1.64 0.76 13 14 H 0.35 1.08 8.23 -92.71 -0.76 0.32 13 15 H 0.11 0.64 7.97 -2.39 -0.02 0.62 13 16 H 0.23 -3.22 8.06 -2.91 -0.02 -3.25 13 17 H 0.40 -4.84 8.90 -92.70 -0.82 -5.66 13 18 H 0.36 -2.52 9.08 -89.69 -0.81 -3.34 13 19 H 0.35 -1.14 8.97 -89.70 -0.80 -1.95 13 Total: 0.00 -9.22 180.37 -0.47 -9.68 By element: Atomic # 1 Polarization: -12.49 SS G_CDS: -1.24 Total: -13.73 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 2.78 Total: 0.87 kcal Atomic # 7 Polarization: 3.39 SS G_CDS: -3.13 Total: 0.26 kcal Atomic # 14 Polarization: 2.34 SS G_CDS: 1.90 Total: 4.23 kcal Atomic # 15 Polarization: -0.55 SS G_CDS: -0.77 Total: -1.32 kcal Total: -9.22 -0.47 -9.68 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104598828.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.273 kcal (2) G-P(sol) polarization free energy of solvation -9.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.05 seconds