Wall clock time and date at job start Mon Mar 30 2020 01:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27938 * 1 3 3 Si 1.86796 * 120.00272 * 2 1 4 4 H 1.48497 * 109.47700 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46885 * 299.99836 * 3 2 1 6 6 H 1.48499 * 109.47167 * 59.99326 * 3 2 1 7 7 C 1.50703 * 119.99885 * 179.97438 * 2 1 3 8 8 N 1.44806 * 108.95337 * 207.66380 * 7 2 1 9 9 C 1.37166 * 123.91914 * 239.29615 * 8 7 2 10 10 P 1.65237 * 103.27501 * 359.97438 * 9 8 7 11 11 C 1.55604 * 108.95271 * 85.00848 * 7 2 1 12 12 H 1.09001 * 111.98465 * 3.90984 * 11 7 2 13 13 N 1.46904 * 111.98318 * 237.50345 * 11 7 2 14 14 H 0.96995 * 120.00309 * 0.02562 * 1 2 3 15 15 H 1.08999 * 108.81495 * 326.33393 * 7 2 1 16 16 H 0.96995 * 118.04352 * 59.30898 * 8 7 2 17 17 H 1.08000 * 128.36410 * 179.97438 * 9 8 7 18 18 H 1.00896 * 110.99623 * 191.64854 * 13 11 7 19 19 H 1.00899 * 110.99568 * 315.59544 * 13 11 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2794 0.0000 0.0000 3 14 2.2134 1.6177 0.0000 4 1 3.6734 1.3464 0.0006 5 1 1.8547 2.3963 -1.2126 6 1 1.8546 2.3965 1.2124 7 6 2.0329 -1.3051 0.0006 8 7 3.3185 -1.1057 0.6364 9 6 4.5217 -1.3332 0.0181 10 15 4.0824 -1.8430 -1.4910 11 6 2.1747 -1.8075 -1.4653 12 1 1.7698 -1.0933 -2.1823 13 7 1.5975 -3.1463 -1.6461 14 1 -0.4850 0.8400 -0.0004 15 1 1.4650 -2.0387 0.5729 16 1 3.3296 -0.7927 1.5544 17 1 5.5161 -1.2090 0.4206 18 1 1.8604 -3.5357 -2.5389 19 1 1.8646 -3.7601 -0.8911 RHF calculation, no. of doubly occupied orbitals= 25 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104598843.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:56 Heat of formation + Delta-G solvation = 72.282806 kcal Electronic energy + Delta-G solvation = -7135.595029 eV Core-core repulsion = 5655.928439 eV Total energy + Delta-G solvation = -1479.666591 eV No. of doubly occupied orbitals = 25 Molecular weight (most abundant/longest-lived isotopes) = 159.038 amu Computer time = 0.05 seconds Orbital eigenvalues (eV) -39.84279 -36.34633 -34.66587 -29.85390 -26.42542 -23.33375 -21.39722 -19.51122 -18.14304 -17.74780 -16.96440 -16.14278 -15.22555 -14.89142 -14.65151 -13.69982 -13.40849 -12.86801 -12.62579 -12.19582 -11.71272 -10.76835 -10.23877 -9.05832 -8.51055 -0.02732 0.39465 0.72165 1.12875 1.26825 1.36917 1.57429 1.68255 2.48886 3.08825 3.11981 3.72070 3.86841 4.05045 4.40092 4.68662 5.29079 5.72037 5.89461 6.28047 6.47957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.026 4.026 3 Si 0.927 3.073 4 H -0.232 1.232 5 H -0.235 1.235 6 H -0.241 1.241 7 C 0.152 3.848 8 N -0.694 5.694 9 C 0.179 3.821 10 P -0.424 5.424 11 C 0.133 3.867 12 H 0.115 0.885 13 N -0.804 5.804 14 H 0.346 0.654 15 H 0.114 0.886 16 H 0.390 0.610 17 H 0.196 0.804 18 H 0.364 0.636 19 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.339 1.184 2.797 3.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.220 5.220 2 C -0.276 4.276 3 Si 0.742 3.258 4 H -0.154 1.154 5 H -0.157 1.157 6 H -0.164 1.164 7 C 0.047 3.953 8 N -0.319 5.319 9 C 0.072 3.928 10 P -0.465 5.465 11 C 0.033 3.967 12 H 0.132 0.868 13 N -0.335 5.335 14 H 0.164 0.836 15 H 0.131 0.869 16 H 0.221 0.779 17 H 0.211 0.789 18 H 0.180 0.820 19 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.010 1.586 2.915 3.319 hybrid contribution 0.256 0.915 1.815 2.048 sum 0.266 2.501 4.730 5.357 Atomic orbital electron populations 1.67997 1.09699 1.37622 1.06674 1.30749 0.97335 1.05132 0.94424 0.85615 0.81908 0.75370 0.82938 1.15370 1.15748 1.16448 1.20573 0.81377 0.95454 0.97941 1.46012 1.04691 1.64524 1.16695 1.30807 0.88678 0.79762 0.93554 1.87466 1.09745 1.44368 1.04964 1.26640 0.86460 0.92271 0.91340 0.86806 1.58979 1.60787 1.04131 1.09573 0.83607 0.86926 0.77860 0.78903 0.81984 0.84093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.61 -0.34 13.82 56.23 0.78 0.44 13 2 C -0.03 0.02 4.76 -13.90 -0.07 -0.05 13 3 Si 0.93 -1.04 28.18 -169.99 -4.79 -5.83 13 4 H -0.23 0.20 6.62 56.52 0.37 0.58 13 5 H -0.23 -0.04 7.11 56.52 0.40 0.36 13 6 H -0.24 0.18 7.11 56.52 0.40 0.58 13 7 C 0.15 -0.13 3.47 -68.60 -0.24 -0.36 13 8 N -0.69 1.73 3.40 -56.59 -0.19 1.54 13 9 C 0.18 -0.34 12.37 55.15 0.68 0.35 13 10 P -0.42 -0.37 22.41 -42.89 -0.96 -1.33 13 11 C 0.13 0.06 4.81 -2.44 -0.01 0.04 13 12 H 0.12 0.15 7.76 -51.93 -0.40 -0.25 13 13 N -0.80 0.00 9.55 -2.68 -0.03 -0.03 13 14 H 0.35 -0.38 8.23 -40.82 -0.34 -0.71 13 15 H 0.11 -0.04 7.86 -51.93 -0.41 -0.45 13 16 H 0.39 -1.81 8.67 -40.82 -0.35 -2.16 13 17 H 0.20 -0.93 8.06 -52.49 -0.42 -1.35 13 18 H 0.36 -0.20 9.08 -39.29 -0.36 -0.55 13 19 H 0.35 -0.25 8.82 -39.29 -0.35 -0.60 13 LS Contribution 182.08 15.07 2.74 2.74 Total: 0.00 -3.52 182.08 -3.53 -7.06 By element: Atomic # 1 Polarization: -3.12 SS G_CDS: -1.45 Total: -4.57 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 0.37 Total: -0.02 kcal Atomic # 7 Polarization: 1.39 SS G_CDS: 0.56 Total: 1.95 kcal Atomic # 14 Polarization: -1.04 SS G_CDS: -4.79 Total: -5.83 kcal Atomic # 15 Polarization: -0.37 SS G_CDS: -0.96 Total: -1.33 kcal Total LS contribution 2.74 Total: 2.74 kcal Total: -3.52 -3.53 -7.06 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104598843.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.339 kcal (2) G-P(sol) polarization free energy of solvation -3.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.05 seconds