Wall clock time and date at job start Mon Mar 30 2020 01:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99819 * 2 1 4 4 H 1.48499 * 109.46605 * 264.87218 * 3 2 1 5 5 H 1.48502 * 109.46993 * 24.87267 * 3 2 1 6 6 H 1.48491 * 109.46955 * 144.87227 * 3 2 1 7 7 C 1.37876 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99680 * 4.36817 * 7 2 1 9 9 C 1.50698 * 120.00074 * 184.37024 * 7 2 1 10 10 H 1.09000 * 110.45809 * 332.72051 * 9 7 2 11 11 C 1.54375 * 110.40862 * 210.31111 * 9 7 2 12 12 C 1.54572 * 105.08736 * 217.37786 * 11 9 7 13 13 H 1.08995 * 110.37237 * 118.82294 * 12 11 9 14 14 O 1.42905 * 110.41927 * 241.12283 * 12 11 9 15 15 C 1.54377 * 104.91307 * 359.97438 * 12 11 9 16 16 N 1.48555 * 110.41267 * 95.13502 * 9 7 2 17 17 H 0.97000 * 119.99784 * 0.02562 * 1 2 3 18 18 H 1.08991 * 110.32787 * 336.26299 * 11 9 7 19 19 H 1.09006 * 110.32257 * 98.37402 * 11 9 7 20 20 H 0.96699 * 113.99828 * 176.96722 * 14 12 11 21 21 H 1.09003 * 110.41143 * 265.04412 * 15 12 11 22 22 H 1.09004 * 110.40902 * 142.72074 * 15 12 11 23 23 H 1.00895 * 111.00389 * 277.82160 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6050 1.9838 -1.3945 5 1 1.3966 2.6816 0.5889 6 1 3.4882 1.4740 0.8056 7 6 2.0046 -1.1940 0.0005 8 1 1.4669 -2.1280 -0.0703 9 6 3.5083 -1.1959 0.1000 10 1 3.9182 -0.2717 -0.3074 11 6 4.0952 -2.4172 -0.6396 12 6 5.2920 -2.8743 0.2252 13 1 5.1352 -3.8921 0.5825 14 8 6.5075 -2.7913 -0.5218 15 6 5.3240 -1.8880 1.4124 16 7 3.9339 -1.3732 1.5122 17 1 -0.4850 0.8401 -0.0004 18 1 3.3523 -3.2118 -0.7074 19 1 4.4335 -2.1302 -1.6353 20 1 7.2976 -3.0220 -0.0142 21 1 6.0181 -1.0723 1.2103 22 1 5.6042 -2.4061 2.3296 23 1 3.9081 -0.4964 2.0105 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104701496.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:40 Heat of formation + Delta-G solvation = -77.665152 kcal Electronic energy + Delta-G solvation = -8761.380592 eV Core-core repulsion = 6994.131666 eV Total energy + Delta-G solvation = -1767.248925 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 157.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.72264 -36.56744 -34.47721 -30.79371 -29.82207 -26.08014 -22.22027 -21.15603 -19.26922 -18.38880 -17.36038 -16.07388 -15.30011 -14.95349 -14.62516 -14.30191 -13.80898 -13.19858 -12.87342 -12.67774 -12.00639 -11.80375 -11.55267 -11.47976 -10.85272 -10.79866 -9.27335 -8.32112 -6.37873 1.29995 1.32775 1.42065 2.29951 2.89920 3.37862 3.79315 3.95514 4.01756 4.25278 4.41273 4.78500 4.84086 4.97572 5.08076 5.27627 5.55417 6.05267 6.35086 6.56359 6.70883 6.95256 7.28899 8.84850 Molecular weight = 157.08amu Principal moments of inertia in cm(-1) A = 0.081840 B = 0.018132 C = 0.017079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.050161 B = 1543.871860 C = 1639.015658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.014 3.986 3 Si 0.952 3.048 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.253 1.253 7 C -0.502 4.502 8 H 0.033 0.967 9 C 0.164 3.836 10 H 0.011 0.989 11 C -0.109 4.109 12 C 0.105 3.895 13 H 0.077 0.923 14 O -0.578 6.578 15 C 0.001 3.999 16 N -0.674 5.674 17 H 0.268 0.732 18 H 0.063 0.937 19 H 0.065 0.935 20 H 0.394 0.606 21 H 0.045 0.955 22 H 0.097 0.903 23 H 0.325 0.675 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.633 -1.274 1.925 12.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.177 1.177 7 C -0.541 4.541 8 H 0.051 0.949 9 C 0.056 3.944 10 H 0.029 0.971 11 C -0.148 4.148 12 C 0.046 3.954 13 H 0.094 0.906 14 O -0.386 6.386 15 C -0.129 4.129 16 N -0.304 5.304 17 H 0.077 0.923 18 H 0.081 0.919 19 H 0.083 0.917 20 H 0.244 0.756 21 H 0.063 0.937 22 H 0.115 0.885 23 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.734 -1.648 1.594 11.956 hybrid contribution 0.553 1.334 0.133 1.450 sum 12.287 -0.314 1.727 12.412 Atomic orbital electron populations 1.70056 1.08189 1.28230 1.51889 1.26007 0.95576 1.03091 0.93787 0.85684 0.78904 0.78627 0.79180 1.19413 1.20851 1.17742 1.21118 0.90763 0.93096 1.49134 0.94885 1.20375 0.93905 0.93684 0.86428 0.97126 1.22324 0.95354 0.98454 0.98627 1.22538 0.84263 0.98133 0.90491 0.90553 1.86516 1.17135 1.92501 1.42410 1.23701 0.91245 0.98377 0.99564 1.64147 1.18358 1.32291 1.15652 0.92332 0.91863 0.91666 0.75566 0.93698 0.88522 0.85980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.22 13.96 21.45 0.30 -58.93 14 2 C 0.01 0.80 5.47 84.65 0.46 1.27 14 3 Si 0.95 44.40 26.99 68.60 1.85 46.25 14 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 14 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 14 6 H -0.25 -10.85 6.68 99.48 0.66 -10.18 14 7 C -0.50 -29.34 9.22 25.60 0.24 -29.11 14 8 H 0.03 2.15 7.89 -2.91 -0.02 2.13 14 9 C 0.16 7.85 2.70 44.31 0.12 7.97 14 10 H 0.01 0.53 5.54 -2.39 -0.01 0.52 14 11 C -0.11 -4.60 6.36 31.60 0.20 -4.40 14 12 C 0.10 3.45 4.44 31.60 0.14 3.59 14 13 H 0.08 2.28 8.14 -2.39 -0.02 2.26 14 14 O -0.58 -16.62 13.28 -148.98 -1.98 -18.59 14 15 C 0.00 0.03 7.19 86.45 0.62 0.65 14 16 N -0.67 -28.67 7.27 -482.79 -3.51 -32.18 14 17 H 0.27 15.62 8.31 -92.71 -0.77 14.85 14 18 H 0.06 2.79 7.74 -2.39 -0.02 2.77 14 19 H 0.06 2.69 7.99 -2.38 -0.02 2.68 14 20 H 0.39 6.83 9.11 -74.06 -0.67 6.16 14 21 H 0.04 1.37 8.08 -2.39 -0.02 1.35 14 22 H 0.10 2.58 8.14 -2.38 -0.02 2.56 14 23 H 0.33 13.41 8.72 -89.70 -0.78 12.63 14 Total: -1.00 -67.57 197.43 -1.84 -69.41 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -0.28 Total: 14.07 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: 1.78 Total: -20.03 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -3.21 Total: -91.11 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -1.98 Total: -18.59 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.85 Total: 46.25 kcal Total: -67.57 -1.84 -69.41 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104701496.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.256 kcal (2) G-P(sol) polarization free energy of solvation -67.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds