Wall clock time and date at job start Mon Mar 30 2020 01:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99898 * 2 1 4 4 H 1.48495 * 109.46815 * 239.99751 * 3 2 1 5 5 H 1.48500 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47127 * 119.99571 * 3 2 1 7 7 C 1.37876 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00006 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00002 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.50830 * 59.99602 * 9 7 2 11 11 C 1.53100 * 109.50927 * 180.08359 * 9 7 2 12 12 N 1.47008 * 109.26139 * 176.82779 * 11 9 7 13 13 C 1.47018 * 110.74800 * 301.38076 * 12 11 9 14 14 C 1.53098 * 109.25645 * 58.61969 * 13 12 11 15 15 O 1.43014 * 109.54063 * 299.88622 * 9 7 2 16 16 H 0.96996 * 119.99929 * 359.97438 * 1 2 3 17 17 H 1.09005 * 109.50187 * 296.76263 * 11 9 7 18 18 H 1.09000 * 109.50570 * 56.84241 * 11 9 7 19 19 H 1.00900 * 111.00253 * 177.61328 * 12 11 9 20 20 H 1.09003 * 109.50608 * 178.55234 * 13 12 11 21 21 H 1.08995 * 109.50863 * 298.68141 * 13 12 11 22 22 H 1.08995 * 109.51077 * 63.08766 * 14 13 12 23 23 H 1.09005 * 109.50772 * 183.21437 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6245 -2.5577 -0.8895 11 6 2.2453 -3.6635 0.0033 12 7 1.5063 -4.9320 0.0801 13 6 0.6737 -4.9772 1.2910 14 6 -0.3047 -3.7998 1.2753 15 8 0.4299 -2.5774 1.1688 16 1 -0.4850 0.8400 0.0004 17 1 2.8350 -3.6406 -0.9132 18 1 2.9076 -3.5745 0.8644 19 1 2.1356 -5.7198 0.0444 20 1 0.1161 -5.9135 1.3145 21 1 1.3103 -4.9097 2.1731 22 1 -0.9766 -3.8962 0.4224 23 1 -0.8850 -3.7965 2.1980 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107114671.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:07 Heat of formation + Delta-G solvation = -71.420587 kcal Electronic energy + Delta-G solvation = -8892.682622 eV Core-core repulsion = 7125.704481 eV Total energy + Delta-G solvation = -1766.978141 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 157.084 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.81177 -35.35414 -34.71508 -31.92217 -28.24889 -26.05063 -23.87784 -21.14624 -18.96970 -17.38957 -16.58414 -16.45876 -15.54802 -15.27880 -14.96289 -14.62108 -13.88644 -12.86685 -12.75274 -12.67931 -12.29907 -11.93779 -11.58510 -11.01230 -10.64875 -10.11188 -9.35556 -8.17960 -6.40428 1.41757 1.45810 1.53545 2.40001 3.01305 3.33368 3.71326 4.15896 4.32571 4.44475 4.52552 4.56009 4.86290 4.92994 5.02441 5.34075 5.68332 5.89138 6.18456 6.53279 6.61883 7.09423 7.36641 8.91203 Molecular weight = 157.08amu Principal moments of inertia in cm(-1) A = 0.101251 B = 0.017660 C = 0.015854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 276.472793 B = 1585.167699 C = 1765.707358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.021 3.979 3 Si 0.972 3.028 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.559 4.559 8 H 0.070 0.930 9 C 0.218 3.782 10 H -0.018 1.018 11 C 0.043 3.957 12 N -0.695 5.695 13 C 0.031 3.969 14 C 0.045 3.955 15 O -0.400 6.400 16 H 0.264 0.736 17 H 0.080 0.920 18 H 0.024 0.976 19 H 0.352 0.648 20 H 0.108 0.892 21 H 0.034 0.966 22 H 0.028 0.972 23 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.679 -6.287 1.636 7.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.181 4.181 3 Si 0.795 3.205 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.597 4.597 8 H 0.088 0.912 9 C 0.162 3.838 10 H -0.001 1.001 11 C -0.086 4.086 12 N -0.328 5.328 13 C -0.099 4.099 14 C -0.032 4.032 15 O -0.319 6.319 16 H 0.072 0.928 17 H 0.098 0.902 18 H 0.043 0.957 19 H 0.171 0.829 20 H 0.126 0.874 21 H 0.052 0.948 22 H 0.046 0.954 23 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.997 -5.834 1.361 6.315 hybrid contribution 0.764 0.472 0.470 1.014 sum 2.761 -5.362 1.831 6.303 Atomic orbital electron populations 1.70189 1.07947 1.27744 1.47908 1.26046 0.95714 1.03460 0.92903 0.85433 0.78266 0.77531 0.79278 1.18600 1.20649 1.19335 1.21393 0.93299 0.91126 1.53834 0.91176 1.19618 0.87516 0.92817 0.83879 1.00077 1.22483 0.95839 0.90093 1.00197 1.60544 1.27699 1.04552 1.40021 1.22572 0.96462 0.99988 0.90856 1.22658 0.94107 0.85714 1.00751 1.88285 1.60956 1.36615 1.46063 0.92768 0.90210 0.95728 0.82935 0.87401 0.94798 0.95365 0.88604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.86 12.85 21.45 0.28 -55.58 14 2 C 0.02 1.24 5.40 84.65 0.46 1.70 14 3 Si 0.97 44.48 29.54 68.60 2.03 46.50 14 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 14 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 14 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 14 7 C -0.56 -32.73 8.80 25.60 0.23 -32.51 14 8 H 0.07 3.88 7.74 -2.91 -0.02 3.85 14 9 C 0.22 12.11 2.66 29.88 0.08 12.19 14 10 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 14 11 C 0.04 1.91 5.99 86.32 0.52 2.43 14 12 N -0.70 -25.50 6.92 -512.99 -3.55 -29.06 14 13 C 0.03 1.06 6.76 86.31 0.58 1.64 14 14 C 0.05 1.95 7.01 72.01 0.50 2.45 14 15 O -0.40 -22.37 9.87 -148.98 -1.47 -23.84 14 16 H 0.26 15.30 8.31 -92.71 -0.77 14.53 14 17 H 0.08 3.30 8.14 -2.38 -0.02 3.28 14 18 H 0.02 1.08 8.14 -2.39 -0.02 1.06 14 19 H 0.35 10.12 8.90 -89.69 -0.80 9.32 14 20 H 0.11 2.88 8.14 -2.39 -0.02 2.86 14 21 H 0.03 1.15 8.14 -2.39 -0.02 1.13 14 22 H 0.03 1.25 8.14 -2.39 -0.02 1.23 14 23 H 0.10 3.56 8.14 -2.38 -0.02 3.54 14 Total: -1.00 -68.08 199.06 0.04 -68.04 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 0.39 Total: 6.03 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: 2.37 Total: -12.10 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -3.28 Total: -84.64 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -1.47 Total: -23.84 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -68.08 0.04 -68.04 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107114671.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.381 kcal (2) G-P(sol) polarization free energy of solvation -68.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds