Wall clock time and date at job start Mon Mar 30 2020 01:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00271 * 2 1 4 4 H 1.48498 * 109.47212 * 239.99733 * 3 2 1 5 5 H 1.48507 * 109.46999 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47502 * 119.99318 * 3 2 1 7 7 C 1.37878 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00542 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00033 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.28665 * 60.67501 * 9 7 2 11 11 C 1.54379 * 110.32329 * 298.54913 * 9 7 2 12 12 N 1.48562 * 104.69842 * 217.08714 * 11 9 7 13 13 C 1.48856 * 104.07618 * 39.46842 * 12 11 9 14 14 C 1.54257 * 110.41136 * 182.85829 * 9 7 2 15 15 H 1.09004 * 110.32547 * 0.04486 * 14 9 7 16 16 O 1.42899 * 110.32334 * 237.83942 * 14 9 7 17 17 H 0.96997 * 120.00116 * 0.02562 * 1 2 3 18 18 H 1.09002 * 110.41258 * 335.92563 * 11 9 7 19 19 H 1.09002 * 110.41328 * 98.24795 * 11 9 7 20 20 H 1.00899 * 111.00206 * 159.10212 * 12 11 9 21 21 H 1.09003 * 110.39541 * 201.75499 * 13 12 11 22 22 H 1.09004 * 110.49212 * 79.38626 * 13 12 11 23 23 H 0.96706 * 113.99764 * 180.02562 * 16 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6288 -2.5763 -0.8910 11 6 0.3833 -2.6173 1.2719 12 7 0.4579 -4.0529 1.6471 13 6 1.8752 -4.4230 1.3825 14 6 2.2325 -3.6870 0.0733 15 1 3.2607 -3.3269 0.1099 16 8 2.0483 -4.5525 -1.0488 17 1 -0.4850 0.8400 -0.0004 18 1 0.7896 -1.9945 2.0688 19 1 -0.6470 -2.3337 1.0567 20 1 0.2228 -4.1852 2.6194 21 1 1.9679 -5.5010 1.2501 22 1 2.5164 -4.0842 2.1962 23 1 2.6390 -5.3182 -1.0561 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211633775.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:22 Heat of formation + Delta-G solvation = -53.108465 kcal Electronic energy + Delta-G solvation = -8836.228107 eV Core-core repulsion = 7070.044040 eV Total energy + Delta-G solvation = -1766.184068 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 157.084 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -37.90526 -34.50286 -32.68169 -28.90915 -27.08093 -24.19817 -20.78593 -19.22403 -17.09977 -15.85328 -15.11383 -14.48833 -14.15736 -12.87710 -12.48690 -12.02303 -11.79211 -11.17872 -10.95507 -10.62033 -10.48696 -10.13168 -9.47171 -9.06531 -8.94197 -8.46716 -7.69106 -6.06535 -4.10535 3.29720 3.34564 3.36721 4.38707 5.15022 5.23651 5.30629 5.64106 5.97198 6.10832 6.25702 6.74174 6.82309 7.08597 7.43003 7.60619 7.73544 7.94167 8.16024 8.35243 8.56807 8.92093 9.53370 11.03684 Molecular weight = 157.08amu Principal moments of inertia in cm(-1) A = 0.077299 B = 0.018448 C = 0.016799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.143419 B = 1517.435624 C = 1666.376893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.057 3.943 10 H 0.047 0.953 11 C 0.061 3.939 12 N -0.674 5.674 13 C 0.008 3.992 14 C 0.099 3.901 15 H 0.053 0.947 16 O -0.560 6.560 17 H 0.263 0.737 18 H 0.031 0.969 19 H 0.076 0.924 20 H 0.316 0.684 21 H 0.065 0.935 22 H 0.035 0.965 23 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.713 -4.618 2.809 6.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.139 4.139 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.075 0.925 9 C 0.037 3.963 10 H 0.065 0.935 11 C -0.068 4.068 12 N -0.301 5.301 13 C -0.122 4.122 14 C 0.040 3.960 15 H 0.071 0.929 16 O -0.363 6.363 17 H 0.072 0.928 18 H 0.049 0.951 19 H 0.094 0.906 20 H 0.129 0.871 21 H 0.084 0.916 22 H 0.053 0.947 23 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.762 -4.319 2.044 5.519 hybrid contribution 1.381 0.994 1.041 1.994 sum 4.143 -3.326 3.085 6.143 Atomic orbital electron populations 1.69962 1.05897 1.26874 1.49680 1.24990 0.94932 0.99182 0.94825 0.86601 0.79559 0.82877 0.78638 1.20136 1.21179 1.20286 1.21118 0.92703 0.90189 1.51947 0.92508 1.19380 0.92168 0.89811 0.94899 0.93519 1.23025 1.01577 0.84094 0.98058 1.63938 1.20310 1.21810 1.24087 1.23611 0.90887 0.99294 0.98442 1.22994 0.99370 0.90660 0.82991 0.92897 1.86675 1.63530 1.38976 1.47108 0.92760 0.95094 0.90551 0.87051 0.91644 0.94714 0.79993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.78 12.34 55.43 0.68 -25.10 14 2 C 0.06 1.77 5.33 -17.82 -0.09 1.68 14 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 14 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 14 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 14 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 14 7 C -0.52 -14.65 8.41 -34.44 -0.29 -14.94 14 8 H 0.06 1.55 7.37 -52.49 -0.39 1.17 14 9 C 0.06 1.51 2.79 -90.39 -0.25 1.26 14 10 H 0.05 1.41 7.98 -51.93 -0.41 1.00 14 11 C 0.06 1.51 6.02 -2.18 -0.01 1.50 14 12 N -0.67 -14.22 7.64 -109.42 -0.84 -15.06 14 13 C 0.01 0.15 7.22 -2.01 -0.01 0.14 14 14 C 0.10 2.20 4.06 -25.35 -0.10 2.09 14 15 H 0.05 1.15 7.43 -51.93 -0.39 0.76 14 16 O -0.56 -11.83 13.26 -35.23 -0.47 -12.29 14 17 H 0.26 7.26 8.31 -40.82 -0.34 6.92 14 18 H 0.03 0.79 7.86 -51.93 -0.41 0.38 14 19 H 0.08 2.03 7.93 -51.93 -0.41 1.62 14 20 H 0.32 5.75 8.93 -39.29 -0.35 5.39 14 21 H 0.07 1.11 8.08 -51.93 -0.42 0.69 14 22 H 0.03 0.63 8.14 -51.93 -0.42 0.21 14 23 H 0.36 5.35 9.12 45.56 0.42 5.77 14 LS Contribution 199.09 15.07 3.00 3.00 Total: -1.00 -30.71 199.09 -5.33 -36.04 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -1.92 Total: 5.36 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -0.77 Total: -8.27 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: -0.15 Total: -40.16 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.47 Total: -12.29 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 3.00 Total: 3.00 kcal Total: -30.71 -5.33 -36.04 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211633775.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.070 kcal (2) G-P(sol) polarization free energy of solvation -30.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds