Wall clock time and date at job start Mon Mar 30 2020 01:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00271 * 2 1 4 4 H 1.48498 * 109.47212 * 239.99733 * 3 2 1 5 5 H 1.48507 * 109.46999 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47502 * 119.99318 * 3 2 1 7 7 C 1.37878 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00542 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00033 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.28665 * 60.67501 * 9 7 2 11 11 C 1.54379 * 110.32329 * 298.54913 * 9 7 2 12 12 N 1.48562 * 104.69842 * 217.08714 * 11 9 7 13 13 C 1.48856 * 104.07618 * 39.46842 * 12 11 9 14 14 C 1.54257 * 110.41136 * 182.85829 * 9 7 2 15 15 H 1.09004 * 110.32547 * 0.04486 * 14 9 7 16 16 O 1.42899 * 110.32334 * 237.83942 * 14 9 7 17 17 H 0.96997 * 120.00116 * 0.02562 * 1 2 3 18 18 H 1.09002 * 110.41258 * 335.92563 * 11 9 7 19 19 H 1.09002 * 110.41328 * 98.24795 * 11 9 7 20 20 H 1.00899 * 111.00206 * 159.10212 * 12 11 9 21 21 H 1.09003 * 110.39541 * 201.75499 * 13 12 11 22 22 H 1.09004 * 110.49212 * 79.38626 * 13 12 11 23 23 H 0.96706 * 113.99764 * 180.02562 * 16 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6288 -2.5763 -0.8910 11 6 0.3833 -2.6173 1.2719 12 7 0.4579 -4.0529 1.6471 13 6 1.8752 -4.4230 1.3825 14 6 2.2325 -3.6870 0.0733 15 1 3.2607 -3.3269 0.1099 16 8 2.0483 -4.5525 -1.0488 17 1 -0.4850 0.8400 -0.0004 18 1 0.7896 -1.9945 2.0688 19 1 -0.6470 -2.3337 1.0567 20 1 0.2228 -4.1852 2.6194 21 1 1.9679 -5.5010 1.2501 22 1 2.5164 -4.0842 2.1962 23 1 2.6390 -5.3182 -1.0561 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211633775.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:22 Heat of formation + Delta-G solvation = -79.340017 kcal Electronic energy + Delta-G solvation = -8837.365593 eV Core-core repulsion = 7070.044040 eV Total energy + Delta-G solvation = -1767.321553 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 157.084 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -39.67946 -36.24162 -34.73977 -30.89650 -28.81623 -26.28458 -22.55350 -21.14157 -19.04807 -17.60254 -17.08261 -16.34309 -15.94673 -14.72932 -14.18787 -13.96628 -13.56891 -13.07143 -12.82424 -12.42863 -12.42083 -12.11679 -11.38530 -11.00813 -10.72449 -10.60684 -9.42025 -8.19479 -6.32099 1.40897 1.43435 1.51276 2.39404 3.10834 3.55467 3.65123 3.97734 4.27284 4.51224 4.62224 4.76297 5.05417 5.19655 5.47895 5.55003 5.73978 5.84915 6.26783 6.56367 6.79710 7.13170 7.36801 8.90647 Molecular weight = 157.08amu Principal moments of inertia in cm(-1) A = 0.077299 B = 0.018448 C = 0.016799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.143419 B = 1517.435624 C = 1666.376893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.011 3.989 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.043 3.957 10 H -0.004 1.004 11 C 0.077 3.923 12 N -0.677 5.677 13 C 0.015 3.985 14 C 0.101 3.899 15 H 0.060 0.940 16 O -0.579 6.579 17 H 0.264 0.736 18 H 0.020 0.980 19 H 0.047 0.953 20 H 0.337 0.663 21 H 0.099 0.901 22 H 0.054 0.946 23 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.066 -5.038 3.549 7.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.189 4.189 3 Si 0.790 3.210 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.079 0.921 9 C 0.024 3.976 10 H 0.014 0.986 11 C -0.052 4.052 12 N -0.306 5.306 13 C -0.114 4.114 14 C 0.043 3.957 15 H 0.077 0.923 16 O -0.386 6.386 17 H 0.073 0.927 18 H 0.038 0.962 19 H 0.065 0.935 20 H 0.152 0.848 21 H 0.118 0.882 22 H 0.072 0.928 23 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 4.136 -4.779 2.796 6.911 hybrid contribution 0.947 1.047 0.767 1.607 sum 5.082 -3.732 3.563 7.242 Atomic orbital electron populations 1.70106 1.07493 1.27782 1.50293 1.25885 0.95795 1.02939 0.94239 0.85502 0.78275 0.78162 0.79084 1.19573 1.20827 1.18999 1.21470 0.93079 0.91279 1.52152 0.92099 1.19358 0.92889 0.91882 0.93490 0.98589 1.22595 0.99290 0.86316 0.97014 1.63826 1.22097 1.18819 1.25836 1.23639 0.89672 1.00943 0.97179 1.22784 0.98251 0.89919 0.84794 0.92260 1.86601 1.64822 1.40262 1.46895 0.92713 0.96190 0.93488 0.84828 0.88239 0.92802 0.76689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.54 12.34 21.45 0.26 -54.28 14 2 C 0.01 0.62 5.33 84.65 0.45 1.07 14 3 Si 0.97 43.64 29.54 68.60 2.03 45.66 14 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 14 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 14 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 14 7 C -0.54 -30.63 8.41 25.60 0.22 -30.42 14 8 H 0.06 3.30 7.37 -2.91 -0.02 3.28 14 9 C 0.04 2.33 2.79 -10.64 -0.03 2.30 14 10 H 0.00 -0.26 7.98 -2.39 -0.02 -0.28 14 11 C 0.08 3.87 6.02 86.45 0.52 4.39 14 12 N -0.68 -27.40 7.64 -500.10 -3.82 -31.22 14 13 C 0.02 0.54 7.22 86.39 0.62 1.16 14 14 C 0.10 4.36 4.06 31.49 0.13 4.49 14 15 H 0.06 2.46 7.43 -2.38 -0.02 2.44 14 16 O -0.58 -23.49 13.26 -148.98 -1.98 -25.47 14 17 H 0.26 14.82 8.31 -92.71 -0.77 14.05 14 18 H 0.02 1.02 7.86 -2.39 -0.02 1.00 14 19 H 0.05 2.58 7.93 -2.39 -0.02 2.56 14 20 H 0.34 11.42 8.93 -89.69 -0.80 10.62 14 21 H 0.10 2.91 8.08 -2.39 -0.02 2.89 14 22 H 0.05 1.74 8.14 -2.39 -0.02 1.72 14 23 H 0.38 10.43 9.12 -74.05 -0.68 9.76 14 Total: -1.00 -66.15 199.09 -1.86 -68.01 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -0.26 Total: 14.29 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 1.91 Total: -17.00 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -3.56 Total: -85.50 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -1.98 Total: -25.47 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -66.15 -1.86 -68.01 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211633775.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.328 kcal (2) G-P(sol) polarization free energy of solvation -66.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds