Wall clock time and date at job start Mon Mar 30 2020 01:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99790 * 2 1 4 4 H 1.48498 * 109.46993 * 270.00039 * 3 2 1 5 5 H 1.48495 * 109.47321 * 29.99830 * 3 2 1 6 6 H 1.48496 * 109.47136 * 150.00153 * 3 2 1 7 7 C 1.37874 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99922 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99807 * 359.97438 * 7 2 1 10 10 H 1.08992 * 112.90879 * 311.25254 * 9 7 2 11 11 C 1.53783 * 113.61115 * 82.50715 * 9 7 2 12 12 C 1.54052 * 87.07848 * 89.11800 * 11 9 7 13 13 C 1.53781 * 86.98687 * 25.42892 * 12 11 9 14 14 H 1.09002 * 113.61445 * 89.16393 * 13 12 11 15 15 C 1.53003 * 113.61337 * 219.98249 * 13 12 11 16 16 F 1.39899 * 109.46842 * 279.13613 * 15 13 12 17 17 H 0.97000 * 120.00541 * 0.02562 * 1 2 3 18 18 H 1.08998 * 113.60991 * 203.66156 * 11 9 7 19 19 H 1.08993 * 113.61424 * 334.56105 * 11 9 7 20 20 H 1.08999 * 113.60931 * 270.92270 * 12 11 9 21 21 H 1.08998 * 113.69722 * 139.94353 * 12 11 9 22 22 H 1.08993 * 109.47143 * 39.13568 * 15 13 12 23 23 H 1.09002 * 109.46629 * 159.13528 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.4658 -2.5350 0.7568 11 6 0.7833 -2.9416 -1.3949 12 6 2.1378 -3.6624 -1.5336 13 6 2.1633 -3.7371 0.0022 14 1 1.6861 -4.6310 0.4038 15 6 3.5456 -3.4795 0.6054 16 9 4.3120 -4.6476 0.5306 17 1 -0.4851 0.8400 -0.0004 18 1 -0.0712 -3.6180 -1.3751 19 1 0.6545 -2.1156 -2.0942 20 1 2.9247 -3.0358 -1.9534 21 1 2.0680 -4.6368 -2.0170 22 1 4.0417 -2.6834 0.0503 23 1 3.4371 -3.1822 1.6484 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213549698.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:16 Heat of formation + Delta-G solvation = -48.531091 kcal Electronic energy + Delta-G solvation = -8784.116211 eV Core-core repulsion = 6932.784761 eV Total energy + Delta-G solvation = -1851.331450 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 158.080 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -46.81099 -37.76163 -32.26779 -27.93972 -26.30948 -22.93536 -21.81314 -18.57216 -15.95372 -15.24445 -15.04108 -14.48447 -14.18609 -13.78867 -12.41123 -12.03852 -11.29521 -11.14761 -10.96456 -10.72921 -10.44449 -10.22398 -9.85413 -9.11168 -8.86617 -8.67688 -8.35186 -6.07771 -4.12147 3.27100 3.34328 3.36474 4.38035 5.24076 5.50905 5.60939 5.74257 5.96689 6.09395 6.31704 6.44150 6.59884 6.70138 6.94463 7.18397 7.38815 7.48555 7.76326 7.89814 8.39214 8.91180 9.53082 11.02607 Molecular weight = 158.08amu Principal moments of inertia in cm(-1) A = 0.063139 B = 0.018855 C = 0.015897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.361990 B = 1484.663059 C = 1760.874693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.066 3.934 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.512 4.512 8 H 0.062 0.938 9 C 0.057 3.943 10 H 0.037 0.963 11 C -0.138 4.138 12 C -0.123 4.123 13 C -0.154 4.154 14 H 0.073 0.927 15 C 0.075 3.925 16 F -0.241 7.241 17 H 0.261 0.739 18 H 0.047 0.953 19 H 0.061 0.939 20 H 0.074 0.926 21 H 0.041 0.959 22 H 0.080 0.920 23 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.629 -3.320 -0.423 4.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.137 4.137 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.550 4.550 8 H 0.080 0.920 9 C 0.038 3.962 10 H 0.056 0.944 11 C -0.176 4.176 12 C -0.161 4.161 13 C -0.173 4.173 14 H 0.092 0.908 15 C 0.020 3.980 16 F -0.222 7.222 17 H 0.071 0.929 18 H 0.065 0.935 19 H 0.080 0.920 20 H 0.093 0.907 21 H 0.060 0.940 22 H 0.098 0.902 23 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.483 -3.217 -0.416 4.759 hybrid contribution 0.370 0.881 -0.059 0.957 sum 3.853 -2.336 -0.475 4.531 Atomic orbital electron populations 1.69976 1.06022 1.26690 1.49615 1.25000 0.94807 0.99151 0.94729 0.86621 0.79906 0.83477 0.78191 1.20605 1.21167 1.19780 1.20920 0.92751 0.89801 1.51497 0.92013 1.19759 0.93136 0.90200 0.93086 0.94436 1.22959 0.93783 0.98415 1.02444 1.22783 0.99725 0.98530 0.95020 1.23304 0.95847 1.01640 0.96504 0.90825 1.22119 0.90899 0.82712 1.02245 1.92659 1.78214 1.53301 1.98028 0.92907 0.93452 0.92050 0.90742 0.93979 0.90194 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.41 13.28 55.43 0.74 -24.68 14 2 C 0.07 1.80 5.46 -17.82 -0.10 1.70 14 3 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 14 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 14 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 14 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 14 7 C -0.51 -13.56 7.94 -34.44 -0.27 -13.83 14 8 H 0.06 1.57 5.68 -52.49 -0.30 1.28 14 9 C 0.06 1.41 3.55 -90.95 -0.32 1.09 14 10 H 0.04 1.01 8.13 -51.93 -0.42 0.59 14 11 C -0.14 -3.17 7.67 -25.77 -0.20 -3.37 14 12 C -0.12 -2.54 7.37 -25.78 -0.19 -2.73 14 13 C -0.15 -3.26 4.03 -89.80 -0.36 -3.62 14 14 H 0.07 1.48 8.14 -51.93 -0.42 1.05 14 15 C 0.07 1.49 6.47 37.16 0.24 1.73 14 16 F -0.24 -4.78 17.36 2.25 0.04 -4.74 14 17 H 0.26 7.12 8.31 -40.82 -0.34 6.78 14 18 H 0.05 1.02 8.14 -51.93 -0.42 0.59 14 19 H 0.06 1.52 8.09 -51.93 -0.42 1.10 14 20 H 0.07 1.54 7.98 -51.93 -0.41 1.13 14 21 H 0.04 0.78 8.14 -51.93 -0.42 0.36 14 22 H 0.08 1.61 6.24 -51.93 -0.32 1.28 14 23 H 0.07 1.31 8.14 -51.93 -0.42 0.88 14 LS Contribution 200.98 15.07 3.03 3.03 Total: -1.00 -27.69 200.98 -5.12 -32.82 By element: Atomic # 1 Polarization: -0.49 SS G_CDS: -2.70 Total: -3.19 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -1.20 Total: -19.04 kcal Atomic # 7 Polarization: -25.41 SS G_CDS: 0.74 Total: -24.68 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.04 Total: -4.74 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 3.03 Total: 3.03 kcal Total: -27.69 -5.12 -32.82 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213549698.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.712 kcal (2) G-P(sol) polarization free energy of solvation -27.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds