Wall clock time and date at job start Mon Mar 30 2020 01:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00015 * 2 1 4 4 H 1.48508 * 109.47065 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47128 * 300.00169 * 3 2 1 6 6 H 1.48495 * 109.47158 * 60.00346 * 3 2 1 7 7 C 1.37880 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99999 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99850 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.43639 * 300.70342 * 9 7 2 11 11 C 1.54892 * 110.59841 * 63.32051 * 9 7 2 12 12 C 1.54888 * 102.74611 * 156.67350 * 11 9 7 13 13 C 1.54265 * 104.19721 * 322.05788 * 12 11 9 14 14 H 1.09005 * 110.02598 * 142.89513 * 13 12 11 15 15 F 1.39894 * 110.07687 * 264.29900 * 13 12 11 16 16 C 1.53873 * 106.59997 * 23.61451 * 13 12 11 17 17 H 0.97001 * 119.99900 * 359.97438 * 1 2 3 18 18 H 1.08992 * 110.75663 * 274.99212 * 11 9 7 19 19 H 1.09000 * 110.75339 * 38.36236 * 11 9 7 20 20 H 1.09007 * 110.48520 * 203.37936 * 12 11 9 21 21 H 1.08996 * 110.48377 * 80.74349 * 12 11 9 22 22 H 1.09002 * 110.03017 * 240.71676 * 16 13 12 23 23 H 1.08996 * 110.07624 * 119.30418 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6094 -2.5682 0.8779 11 6 0.4143 -2.6453 -1.2958 12 6 0.2331 -4.1790 -1.4144 13 6 1.5847 -4.7569 -0.9465 14 1 1.4225 -5.6738 -0.3796 15 9 2.4045 -5.0151 -2.0503 16 6 2.2319 -3.6889 -0.0475 17 1 -0.4850 0.8401 0.0004 18 1 -0.5505 -2.1493 -1.1904 19 1 0.9597 -2.2533 -2.1542 20 1 0.0352 -4.4609 -2.4486 21 1 -0.5729 -4.5193 -0.7643 22 1 3.1843 -3.3710 -0.4717 23 1 2.3846 -4.0869 0.9557 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213550424.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:11 Heat of formation + Delta-G solvation = -92.524885 kcal Electronic energy + Delta-G solvation = -8806.903958 eV Core-core repulsion = 6953.664793 eV Total energy + Delta-G solvation = -1853.239164 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 158.080 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -48.46460 -38.22983 -34.39110 -30.11150 -29.00111 -25.90287 -21.40203 -21.02902 -18.59773 -17.39506 -16.59572 -16.17586 -15.68249 -14.80547 -14.45420 -13.86818 -13.26683 -12.97686 -12.78721 -12.32696 -12.17180 -11.75001 -11.43490 -11.37241 -11.00957 -10.84920 -10.47495 -8.14151 -6.23674 1.39198 1.41148 1.52622 2.42402 3.16289 3.76527 3.84298 3.92653 4.11840 4.65524 4.80812 4.87489 4.99249 5.08066 5.13179 5.34940 5.55566 5.63066 5.86243 5.95974 6.35673 6.85858 7.43625 8.94798 Molecular weight = 158.08amu Principal moments of inertia in cm(-1) A = 0.091554 B = 0.016299 C = 0.015087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 305.758656 B = 1717.489385 C = 1855.514690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 0.954 3.046 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.536 4.536 8 H 0.050 0.950 9 C 0.035 3.965 10 H 0.011 0.989 11 C -0.098 4.098 12 C -0.145 4.145 13 C 0.086 3.914 14 H 0.111 0.889 15 F -0.231 7.231 16 C -0.140 4.140 17 H 0.261 0.739 18 H 0.048 0.952 19 H 0.028 0.972 20 H 0.076 0.924 21 H 0.091 0.909 22 H 0.055 0.945 23 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.249 -6.204 -0.886 6.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.574 4.574 8 H 0.069 0.931 9 C 0.017 3.983 10 H 0.030 0.970 11 C -0.137 4.137 12 C -0.183 4.183 13 C 0.050 3.950 14 H 0.129 0.871 15 F -0.212 7.212 16 C -0.178 4.178 17 H 0.070 0.930 18 H 0.067 0.933 19 H 0.047 0.953 20 H 0.094 0.906 21 H 0.110 0.890 22 H 0.074 0.926 23 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.130 -6.100 -0.909 6.270 hybrid contribution 0.331 1.144 -0.057 1.193 sum 1.460 -4.956 -0.966 5.256 Atomic orbital electron populations 1.70075 1.07129 1.27208 1.51299 1.25764 0.95751 1.02438 0.94763 0.85562 0.79057 0.79724 0.77675 1.19274 1.20665 1.20357 1.21598 0.92876 0.92181 1.50724 0.93144 1.19488 0.92956 0.92138 0.93739 0.97039 1.22275 0.99697 0.93448 0.98232 1.23013 0.96524 0.96575 1.02163 1.22419 0.89123 0.99607 0.83853 0.87079 1.92735 1.75377 1.95569 1.57539 1.22842 0.99608 0.95923 0.99430 0.93004 0.93329 0.95320 0.90573 0.89015 0.92635 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.62 12.15 21.45 0.26 -53.36 14 2 C 0.01 0.66 5.34 84.66 0.45 1.11 14 3 Si 0.95 44.25 29.54 68.60 2.03 46.28 14 4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 14 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 14 6 H -0.28 -12.52 7.11 99.48 0.71 -11.82 14 7 C -0.54 -30.20 8.48 25.60 0.22 -29.98 14 8 H 0.05 2.82 7.56 -2.91 -0.02 2.80 14 9 C 0.04 1.78 2.75 -10.46 -0.03 1.75 14 10 H 0.01 0.62 8.14 -2.39 -0.02 0.60 14 11 C -0.10 -4.68 5.69 31.89 0.18 -4.50 14 12 C -0.15 -5.26 6.62 31.67 0.21 -5.05 14 13 C 0.09 3.01 4.68 31.32 0.15 3.16 14 14 H 0.11 3.04 8.14 -2.38 -0.02 3.02 14 15 F -0.23 -8.79 17.05 44.97 0.77 -8.02 14 16 C -0.14 -5.78 6.21 31.32 0.19 -5.58 14 17 H 0.26 14.44 8.31 -92.71 -0.77 13.67 14 18 H 0.05 2.50 7.46 -2.39 -0.02 2.48 14 19 H 0.03 1.44 8.05 -2.39 -0.02 1.42 14 20 H 0.08 2.53 8.11 -2.38 -0.02 2.51 14 21 H 0.09 2.92 8.14 -2.39 -0.02 2.90 14 22 H 0.05 2.42 7.55 -2.39 -0.02 2.40 14 23 H 0.08 2.80 8.14 -2.39 -0.02 2.78 14 Total: -1.00 -60.53 199.44 5.60 -54.93 By element: Atomic # 1 Polarization: -1.90 SS G_CDS: 1.18 Total: -0.73 kcal Atomic # 6 Polarization: -40.47 SS G_CDS: 1.37 Total: -39.10 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.26 Total: -53.36 kcal Atomic # 9 Polarization: -8.79 SS G_CDS: 0.77 Total: -8.02 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -60.53 5.60 -54.93 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213550424.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.597 kcal (2) G-P(sol) polarization free energy of solvation -60.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds