Wall clock time and date at job start Mon Mar 30 2020 02:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38930 * 119.87011 * 2 1 4 4 N 1.32341 * 120.42550 * 179.97438 * 3 2 1 5 5 C 1.31826 * 120.17693 * 359.66545 * 4 3 2 6 6 C 1.40765 * 119.74571 * 0.61062 * 5 4 3 7 7 C 1.41351 * 120.21001 * 179.68179 * 6 5 4 8 8 H 1.08004 * 120.00128 * 351.23159 * 7 6 5 9 9 C 1.40068 * 119.99928 * 171.50401 * 7 6 5 10 10 N 1.30725 * 120.00046 * 164.39832 * 9 7 6 11 11 Si 1.86797 * 120.00280 * 344.39845 * 9 7 6 12 12 H 1.48500 * 109.47167 * 84.66922 * 11 9 7 13 13 H 1.48502 * 109.47406 * 204.67281 * 11 9 7 14 14 H 1.48506 * 109.47092 * 324.67304 * 11 9 7 15 15 N 1.31690 * 119.87793 * 179.97438 * 2 1 3 16 16 H 1.08999 * 109.46973 * 270.02060 * 1 2 3 17 17 H 1.08997 * 109.47299 * 30.02486 * 1 2 3 18 18 H 1.09000 * 109.46643 * 150.01702 * 1 2 3 19 19 H 1.07998 * 119.78739 * 359.97438 * 3 2 1 20 20 H 1.08005 * 120.12733 * 180.31298 * 5 4 3 21 21 H 0.97001 * 120.00410 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.2047 0.0000 4 7 3.5223 1.2176 0.0005 5 6 4.1959 0.0845 0.0077 6 6 3.5024 -1.1405 0.0018 7 6 4.2149 -2.3612 0.0026 8 1 5.2861 -2.3614 -0.1349 9 6 3.5309 -3.5712 0.1760 10 7 4.1164 -4.7015 -0.1217 11 14 1.7821 -3.5699 0.8325 12 1 0.8329 -3.3500 -0.2881 13 1 1.4940 -4.8767 1.4762 14 1 1.6293 -2.4817 1.8315 15 7 2.1630 -1.1419 0.0005 16 1 -0.3633 0.0004 1.0277 17 1 -0.3634 0.8897 -0.5142 18 1 -0.3632 -0.8902 -0.5136 19 1 1.6534 2.1368 -0.0004 20 1 5.2759 0.0959 0.0132 21 1 3.6426 -5.5394 -0.0020 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213570339.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:09 Heat of formation + Delta-G solvation = -3.287057 kcal Electronic energy + Delta-G solvation = -8802.684254 eV Core-core repulsion = 7062.776083 eV Total energy + Delta-G solvation = -1739.908171 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 164.064 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.18539 -36.06543 -34.85437 -33.48521 -29.34258 -27.69923 -24.37105 -22.82575 -19.84657 -17.83738 -17.44737 -16.95404 -15.61421 -15.14660 -14.69237 -13.82762 -13.58329 -13.54068 -13.25804 -12.98859 -12.77437 -12.51760 -11.60569 -11.38078 -11.09487 -9.85961 -9.44466 -9.03468 -6.86353 0.39009 0.71472 1.41050 1.51103 1.59152 2.35772 2.50376 3.47152 3.68237 3.99729 4.16256 4.45712 4.67249 4.80110 4.81107 5.00586 5.14123 5.26322 5.66562 5.90274 6.33508 6.39237 7.04867 7.51138 7.90211 Molecular weight = 164.06amu Principal moments of inertia in cm(-1) A = 0.057300 B = 0.024216 C = 0.017554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.539755 B = 1156.006438 C = 1594.687288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.116 3.884 3 C -0.113 4.113 4 N -0.431 5.431 5 C -0.069 4.069 6 C 0.185 3.815 7 C -0.425 4.425 8 H 0.087 0.913 9 C 0.055 3.945 10 N -0.808 5.808 11 Si 1.045 2.955 12 H -0.274 1.274 13 H -0.309 1.309 14 H -0.284 1.284 15 N -0.565 5.565 16 H 0.088 0.912 17 H 0.106 0.894 18 H 0.064 0.936 19 H 0.173 0.827 20 H 0.152 0.848 21 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.984 3.759 1.124 8.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.029 4.029 3 C -0.270 4.270 4 N -0.142 5.142 5 C -0.237 4.237 6 C 0.060 3.940 7 C -0.457 4.457 8 H 0.105 0.895 9 C -0.167 4.167 10 N -0.431 5.431 11 Si 0.877 3.123 12 H -0.201 1.201 13 H -0.240 1.240 14 H -0.212 1.212 15 N -0.289 5.289 16 H 0.106 0.894 17 H 0.125 0.875 18 H 0.083 0.917 19 H 0.190 0.810 20 H 0.169 0.831 21 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.868 3.532 1.055 7.794 hybrid contribution -0.039 -0.310 0.110 0.331 sum -6.906 3.222 1.165 7.709 Atomic orbital electron populations 1.20763 0.86633 1.04120 1.03788 1.22628 0.99006 0.89766 0.91456 1.23060 0.90359 0.98437 1.15164 1.67775 1.09667 1.30432 1.06339 1.23226 1.00255 0.88144 1.12123 1.19531 0.89079 0.95000 0.90406 1.19585 0.96509 0.89110 1.40521 0.89480 1.26962 1.04896 0.93920 0.90926 1.69607 1.41299 1.00328 1.31901 0.83913 0.76253 0.73354 0.78753 1.20070 1.24031 1.21156 1.67365 1.08444 1.29089 1.24036 0.89374 0.87540 0.91746 0.81014 0.83096 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.92 10.19 71.24 0.73 -2.19 14 2 C 0.12 4.96 6.79 42.75 0.29 5.25 14 3 C -0.11 -4.69 10.88 84.78 0.92 -3.76 14 4 N -0.43 -20.06 10.48 -192.91 -2.02 -22.08 14 5 C -0.07 -3.38 10.99 85.31 0.94 -2.45 14 6 C 0.18 9.75 6.28 40.21 0.25 10.00 14 7 C -0.43 -23.36 9.68 23.48 0.23 -23.13 14 8 H 0.09 4.85 8.06 -2.91 -0.02 4.83 14 9 C 0.06 2.92 5.52 85.30 0.47 3.39 14 10 N -0.81 -42.33 13.92 21.84 0.30 -42.03 14 11 Si 1.05 48.60 25.37 68.60 1.74 50.34 14 12 H -0.27 -12.74 7.11 99.48 0.71 -12.03 14 13 H -0.31 -13.33 7.11 99.48 0.71 -12.62 14 14 H -0.28 -13.85 6.79 99.48 0.68 -13.18 14 15 N -0.56 -28.44 5.25 -176.67 -0.93 -29.37 14 16 H 0.09 2.40 8.14 -2.39 -0.02 2.38 14 17 H 0.11 2.45 8.08 -2.39 -0.02 2.43 14 18 H 0.06 2.04 8.14 -2.39 -0.02 2.02 14 19 H 0.17 5.64 8.06 -2.91 -0.02 5.62 14 20 H 0.15 6.85 8.06 -2.91 -0.02 6.82 14 21 H 0.30 14.22 8.29 -92.71 -0.77 13.45 14 Total: -1.00 -60.41 193.19 4.11 -56.30 By element: Atomic # 1 Polarization: -1.47 SS G_CDS: 1.19 Total: -0.27 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 3.83 Total: -12.89 kcal Atomic # 7 Polarization: -90.83 SS G_CDS: -2.65 Total: -93.47 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 1.74 Total: 50.34 kcal Total: -60.41 4.11 -56.30 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213570339.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.008 kcal (2) G-P(sol) polarization free energy of solvation -60.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds