Wall clock time and date at job start Mon Mar 30 2020 02:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38921 * 119.78953 * 2 1 4 4 N 1.31698 * 120.25859 * 180.02562 * 3 2 1 5 5 C 1.33932 * 119.80776 * 359.97438 * 4 3 2 6 6 C 1.41354 * 120.20869 * 179.97438 * 5 4 3 7 7 H 1.08002 * 120.00461 * 180.02562 * 6 5 4 8 8 C 1.40073 * 119.99774 * 359.72614 * 6 5 4 9 9 N 1.30724 * 120.00113 * 0.27878 * 8 6 5 10 10 Si 1.86803 * 119.99980 * 180.27319 * 8 6 5 11 11 H 1.48504 * 109.46768 * 60.00333 * 10 8 6 12 12 H 1.48497 * 109.46782 * 180.02562 * 10 8 6 13 13 H 1.48493 * 109.47374 * 300.00611 * 10 8 6 14 14 C 1.40765 * 119.58578 * 0.26188 * 5 4 3 15 15 N 1.31827 * 119.74196 * 359.44817 * 14 5 4 16 16 H 1.08999 * 109.46916 * 90.00073 * 1 2 3 17 17 H 1.08999 * 109.47238 * 209.99807 * 1 2 3 18 18 H 1.08997 * 109.47036 * 329.99764 * 1 2 3 19 19 H 1.08010 * 119.87245 * 0.02562 * 3 2 1 20 20 H 0.96996 * 120.00361 * 179.97438 * 9 8 6 21 21 H 1.07998 * 120.12920 * 179.74168 * 14 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.2056 0.0000 4 7 3.5141 1.2164 -0.0005 5 6 4.1894 0.0598 -0.0005 6 6 5.6029 0.0615 -0.0016 7 1 6.1441 -0.8732 -0.0020 8 6 6.3018 1.2754 -0.0085 9 7 5.6468 2.4067 -0.0084 10 14 8.1698 1.2776 -0.0176 11 1 8.6596 0.5748 -1.2306 12 1 8.6630 2.6783 -0.0234 13 1 8.6716 0.5816 1.1943 14 6 3.4826 -1.1576 -0.0056 15 7 2.1644 -1.1485 0.0008 16 1 -0.3633 0.0000 -1.0277 17 1 -0.3634 -0.8900 0.5138 18 1 -0.3633 0.8899 0.5139 19 1 1.6516 2.1378 0.0004 20 1 6.1307 3.2473 -0.0128 21 1 4.0183 -2.0954 -0.0098 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213570602.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:10 Heat of formation + Delta-G solvation = 8.884598 kcal Electronic energy + Delta-G solvation = -8648.104587 eV Core-core repulsion = 6908.724219 eV Total energy + Delta-G solvation = -1739.380368 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 164.064 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.84562 -36.08333 -33.99321 -33.06224 -29.93239 -26.29871 -24.65447 -22.88463 -19.51529 -17.90744 -16.90418 -16.15257 -15.84039 -15.25819 -14.37168 -13.50193 -13.34265 -13.20647 -12.89329 -12.84274 -12.50215 -12.02432 -11.56853 -11.47814 -11.02136 -9.66028 -9.33779 -8.38828 -6.64117 0.61244 1.07915 1.40565 1.54307 1.54831 2.18888 2.75486 3.76506 3.90719 4.15674 4.41229 4.63367 4.81983 4.97459 5.01893 5.13292 5.21792 5.39729 5.82917 6.09618 6.48891 6.70825 7.32318 7.89758 8.30861 Molecular weight = 164.06amu Principal moments of inertia in cm(-1) A = 0.116928 B = 0.014541 C = 0.013024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 239.405490 B = 1925.096174 C = 2149.352535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.108 4.108 3 C 0.072 3.928 4 N -0.489 5.489 5 C 0.168 3.832 6 C -0.443 4.443 7 H 0.103 0.897 8 C 0.019 3.981 9 N -0.752 5.752 10 Si 0.997 3.003 11 H -0.255 1.255 12 H -0.267 1.267 13 H -0.255 1.255 14 C -0.081 4.081 15 N -0.442 5.442 16 H 0.064 0.936 17 H 0.059 0.941 18 H 0.080 0.920 19 H 0.156 0.844 20 H 0.285 0.715 21 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.146 0.027 -0.002 0.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.247 4.247 3 C -0.096 4.096 4 N -0.207 5.207 5 C 0.042 3.958 6 C -0.475 4.475 7 H 0.121 0.879 8 C -0.203 4.203 9 N -0.373 5.373 10 Si 0.816 3.184 11 H -0.179 1.179 12 H -0.192 1.192 13 H -0.179 1.179 14 C -0.250 4.250 15 N -0.155 5.155 16 H 0.083 0.917 17 H 0.078 0.922 18 H 0.098 0.902 19 H 0.173 0.827 20 H 0.096 0.904 21 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.149 0.289 0.002 0.325 hybrid contribution 0.627 0.069 -0.019 0.631 sum 0.775 0.359 -0.017 0.855 Atomic orbital electron populations 1.20224 0.87214 1.02470 1.01875 1.22046 0.98549 0.89675 1.14475 1.23846 0.92369 0.98418 0.94948 1.69488 1.06489 1.28415 1.16264 1.19893 0.95945 0.88641 0.91297 1.20089 0.89910 0.95398 1.42066 0.87915 1.27180 1.06732 0.94152 0.92265 1.70168 1.40022 0.99250 1.27843 0.85033 0.74157 0.78793 0.80398 1.17931 1.19160 1.17924 1.23367 0.90463 0.98424 1.12713 1.67604 1.09477 1.30404 1.08043 0.91682 0.92200 0.90152 0.82699 0.90399 0.83446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.05 10.18 71.24 0.73 -1.33 14 2 C -0.11 -5.05 6.80 42.65 0.29 -4.76 14 3 C 0.07 3.58 10.87 84.88 0.92 4.50 14 4 N -0.49 -27.84 8.05 -188.52 -1.52 -29.36 14 5 C 0.17 9.48 6.55 40.21 0.26 9.75 14 6 C -0.44 -23.61 9.16 23.48 0.22 -23.40 14 7 H 0.10 4.95 7.85 -2.91 -0.02 4.93 14 8 C 0.02 0.97 5.50 85.30 0.47 1.44 14 9 N -0.75 -39.88 11.49 21.85 0.25 -39.63 14 10 Si 1.00 36.50 29.56 68.60 2.03 38.53 14 11 H -0.26 -8.97 7.11 99.48 0.71 -8.26 14 12 H -0.27 -9.30 7.11 99.48 0.71 -8.60 14 13 H -0.26 -8.97 7.11 99.48 0.71 -8.26 14 14 C -0.08 -4.25 10.99 85.31 0.94 -3.31 14 15 N -0.44 -22.45 10.40 -181.05 -1.88 -24.33 14 16 H 0.06 2.03 8.14 -2.39 -0.02 2.01 14 17 H 0.06 1.98 8.14 -2.39 -0.02 1.96 14 18 H 0.08 2.32 8.08 -2.39 -0.02 2.30 14 19 H 0.16 6.50 8.06 -2.91 -0.02 6.48 14 20 H 0.29 13.54 8.29 -92.71 -0.77 12.78 14 21 H 0.15 6.97 8.06 -2.91 -0.02 6.95 14 Total: -1.00 -63.55 197.49 3.93 -59.62 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 1.22 Total: 12.29 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 3.82 Total: -17.12 kcal Atomic # 7 Polarization: -90.17 SS G_CDS: -3.15 Total: -93.32 kcal Atomic # 14 Polarization: 36.50 SS G_CDS: 2.03 Total: 38.53 kcal Total: -63.55 3.93 -59.62 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213570602.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.506 kcal (2) G-P(sol) polarization free energy of solvation -63.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds