Wall clock time and date at job start Mon Mar 30 2020 02:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.38808 * 125.68850 * 279.72842 * 3 2 1 5 5 C 1.38661 * 107.11839 * 180.02562 * 4 3 2 6 6 C 1.40115 * 106.83771 * 0.02562 * 5 4 3 7 7 C 1.39237 * 125.94166 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00524 * 6.23935 * 7 6 5 9 9 C 1.40551 * 119.99703 * 186.24594 * 7 6 5 10 10 N 1.30536 * 120.00352 * 6.49714 * 9 7 6 11 11 Si 1.86806 * 119.99796 * 186.22629 * 9 7 6 12 12 H 1.48505 * 109.47057 * 265.28848 * 11 9 7 13 13 H 1.48502 * 109.47150 * 25.28503 * 11 9 7 14 14 H 1.48503 * 109.47040 * 145.28713 * 11 9 7 15 15 O 1.34867 * 125.69211 * 100.00000 * 3 2 1 16 16 H 1.07997 * 126.44203 * 359.97438 * 4 3 2 17 17 H 1.08005 * 126.58053 * 180.02562 * 5 4 3 18 18 H 0.96996 * 120.00081 * 179.72381 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3778 -0.1895 1.1112 5 6 4.6922 -0.1137 0.6761 6 6 4.6497 0.1239 -0.7042 7 6 5.7517 0.2695 -1.5427 8 1 6.7475 0.1015 -1.1599 9 6 5.5681 0.6351 -2.8873 10 7 4.3801 0.9615 -3.3186 11 14 7.0257 0.6614 -4.0554 12 1 7.5832 2.0363 -4.1204 13 1 8.0700 -0.2735 -3.5650 14 1 6.5825 0.2424 -5.4094 15 8 3.3547 0.1912 -1.0787 16 1 3.0465 -0.3630 2.1243 17 1 5.5786 -0.2178 1.2843 18 1 4.2541 1.2177 -4.2456 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217876272.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:12 Heat of formation + Delta-G solvation = 3.875202 kcal Electronic energy + Delta-G solvation = -8226.219191 eV Core-core repulsion = 6416.214415 eV Total energy + Delta-G solvation = -1810.004775 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 163.037 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -42.28113 -37.30351 -35.78011 -33.24719 -31.28583 -27.55164 -23.25069 -21.85936 -19.56970 -19.39607 -17.05779 -16.34226 -15.68545 -14.79395 -14.21126 -14.09690 -14.06409 -13.22321 -13.11329 -12.94792 -12.83345 -12.45489 -11.86925 -11.35720 -10.39336 -9.32752 -8.90225 -6.62375 0.62632 1.39142 1.43249 1.55764 1.62164 1.98379 2.16044 2.66618 2.74768 3.11347 3.99384 4.46447 4.92506 5.00210 5.30063 5.41938 5.89913 6.00483 6.41986 6.52530 6.67754 7.08012 8.09207 Molecular weight = 163.04amu Principal moments of inertia in cm(-1) A = 0.086637 B = 0.015184 C = 0.013016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 323.111000 B = 1843.629546 C = 2150.762377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C 0.327 3.673 3 C -0.190 4.190 4 C -0.053 4.053 5 C -0.379 4.379 6 C 0.196 3.804 7 C -0.441 4.441 8 H 0.135 0.865 9 C 0.019 3.981 10 N -0.794 5.794 11 Si 1.010 2.990 12 H -0.256 1.256 13 H -0.241 1.241 14 H -0.270 1.270 15 O -0.181 6.181 16 H 0.163 0.837 17 H 0.151 0.849 18 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.154 -0.520 -0.164 7.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 C 0.020 3.980 3 C -0.241 4.241 4 C -0.075 4.075 5 C -0.400 4.400 6 C 0.141 3.859 7 C -0.469 4.469 8 H 0.152 0.848 9 C -0.202 4.202 10 N -0.419 5.419 11 Si 0.828 3.172 12 H -0.180 1.180 13 H -0.164 1.164 14 H -0.195 1.195 15 O -0.080 6.080 16 H 0.181 0.819 17 H 0.169 0.831 18 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.097 -0.402 -0.592 5.147 hybrid contribution 0.536 0.100 -0.421 0.689 sum 5.634 -0.302 -1.013 5.732 Atomic orbital electron populations 1.81088 1.11373 1.17439 1.07978 1.23987 0.90203 0.91069 0.92766 1.16695 0.83847 1.34807 0.88701 1.21739 0.92261 0.96392 0.97149 1.21743 0.97241 1.27209 0.93771 1.20422 0.81397 0.90612 0.93422 1.19597 0.93477 1.39594 0.94220 0.84770 1.27475 1.00798 0.90917 1.00993 1.69738 1.26049 1.26881 1.19258 0.84747 0.76274 0.80426 0.75752 1.18041 1.16404 1.19451 1.84457 1.16552 1.74398 1.32557 0.81924 0.83093 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -23.68 18.54 19.00 0.35 -23.33 13 2 C 0.33 15.75 15.89 88.33 1.40 17.15 13 3 C -0.19 -9.44 7.11 23.65 0.17 -9.27 13 4 C -0.05 -2.29 10.83 22.51 0.24 -2.05 13 5 C -0.38 -17.03 10.89 22.83 0.25 -16.78 13 6 C 0.20 10.09 6.75 22.97 0.15 10.25 13 7 C -0.44 -21.03 9.30 23.07 0.21 -20.82 13 8 H 0.13 5.59 7.86 -2.91 -0.02 5.57 13 9 C 0.02 0.87 5.50 85.45 0.47 1.34 13 10 N -0.79 -39.94 12.04 21.93 0.26 -39.67 13 11 Si 1.01 32.83 29.57 68.60 2.03 34.86 13 12 H -0.26 -7.95 7.11 99.48 0.71 -7.25 13 13 H -0.24 -7.26 7.11 99.48 0.71 -6.55 13 14 H -0.27 -8.62 7.11 99.48 0.71 -7.92 13 15 O -0.18 -10.09 9.04 -14.83 -0.13 -10.22 13 16 H 0.16 5.61 8.06 -2.91 -0.02 5.58 13 17 H 0.15 5.84 8.06 -2.91 -0.02 5.82 13 18 H 0.30 13.44 8.29 -92.71 -0.77 12.67 13 Total: -1.00 -57.32 189.05 6.70 -50.62 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 1.28 Total: 7.93 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: 2.90 Total: -20.18 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: 0.62 Total: -63.01 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -0.13 Total: -10.22 kcal Atomic # 14 Polarization: 32.83 SS G_CDS: 2.03 Total: 34.86 kcal Total: -57.32 6.70 -50.62 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217876272.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.497 kcal (2) G-P(sol) polarization free energy of solvation -57.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds