Wall clock time and date at job start Mon Mar 30 2020 01:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 H 1.08996 * 110.33378 * 60.79587 * 9 7 2 11 11 C 1.54907 * 110.37411 * 183.17621 * 9 7 2 12 12 C 1.55140 * 101.65147 * 155.90001 * 11 9 7 13 13 H 1.09002 * 110.70715 * 82.72859 * 12 11 9 14 14 F 1.39901 * 110.85442 * 205.89003 * 12 11 9 15 15 C 1.54315 * 103.01994 * 324.34291 * 12 11 9 16 16 N 1.47443 * 107.23540 * 22.28713 * 15 12 11 17 17 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 18 18 H 1.08998 * 110.98751 * 273.98979 * 11 9 7 19 19 H 1.08994 * 110.99275 * 37.80770 * 11 9 7 20 20 H 1.09002 * 109.88858 * 262.87627 * 15 12 11 21 21 H 1.09004 * 109.89251 * 141.69191 * 15 12 11 22 22 H 1.00896 * 111.00263 * 123.25685 * 16 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6293 -2.5776 -0.8924 11 6 2.2369 -3.6912 0.0793 12 6 1.3391 -4.8002 0.6884 13 1 0.7428 -5.2822 -0.0864 14 9 2.1103 -5.7439 1.3753 15 6 0.4356 -4.0186 1.6652 16 7 0.4204 -2.6140 1.2173 17 1 -0.4850 0.8401 0.0004 18 1 2.5882 -3.9744 -0.9129 19 1 3.0746 -3.4616 0.7376 20 1 0.8402 -4.0814 2.6754 21 1 -0.5751 -4.4261 1.6422 22 1 -0.5226 -2.3003 1.0428 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000222031020.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:52 Heat of formation + Delta-G solvation = -56.089513 kcal Electronic energy + Delta-G solvation = -8871.867000 eV Core-core repulsion = 6954.781881 eV Total energy + Delta-G solvation = -1917.085119 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 159.075 amu Computer time = 0.05 seconds Orbital eigenvalues (eV) -47.03271 -36.92187 -32.38345 -28.90447 -27.94769 -24.31250 -20.46843 -19.84657 -16.49528 -16.24787 -15.13877 -14.41744 -13.95805 -13.82804 -12.77123 -12.22362 -11.95187 -11.28035 -11.14278 -10.84619 -10.51923 -10.25103 -10.15314 -9.50351 -9.20782 -8.47759 -6.98118 -6.02489 -4.04970 3.35043 3.39115 3.42516 4.45404 5.08190 5.16678 5.33251 5.37008 5.62535 5.98498 6.14917 6.36446 6.53305 6.69033 6.85924 7.34106 7.90347 8.13178 8.47271 8.80510 8.99626 9.61508 11.09315 Molecular weight = 159.08amu Principal moments of inertia in cm(-1) A = 0.105559 B = 0.015495 C = 0.014336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 265.190599 B = 1806.651556 C = 1952.712271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.074 3.926 3 Si 0.896 3.104 4 H -0.288 1.288 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.506 4.506 8 H 0.058 0.942 9 C 0.210 3.790 10 H 0.012 0.988 11 C -0.143 4.143 12 C 0.058 3.942 13 H 0.078 0.922 14 F -0.220 7.220 15 C 0.023 3.977 16 N -0.659 5.659 17 H 0.261 0.739 18 H 0.064 0.936 19 H 0.077 0.923 20 H 0.068 0.932 21 H 0.039 0.961 22 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.545 -5.235 0.131 5.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.129 4.129 3 Si 0.724 3.276 4 H -0.214 1.214 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.545 4.545 8 H 0.076 0.924 9 C 0.104 3.896 10 H 0.030 0.970 11 C -0.181 4.181 12 C 0.021 3.979 13 H 0.096 0.904 14 F -0.201 7.201 15 C -0.108 4.108 16 N -0.291 5.291 17 H 0.071 0.929 18 H 0.083 0.917 19 H 0.095 0.905 20 H 0.086 0.914 21 H 0.058 0.942 22 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.895 -4.909 0.593 5.025 hybrid contribution -0.179 0.386 -0.559 0.702 sum 0.716 -4.523 0.034 4.579 Atomic orbital electron populations 1.69843 1.06063 1.26797 1.50004 1.24947 0.94824 0.99105 0.94062 0.86604 0.79545 0.82866 0.78547 1.21387 1.20180 1.20392 1.20943 0.92577 0.89877 1.51084 0.92354 1.19896 0.89665 0.92402 0.87647 0.96996 1.23355 0.99613 0.95111 1.00052 1.23053 0.92926 0.87698 0.94246 0.90386 1.92730 1.77763 1.67602 1.82019 1.23167 0.97002 0.91758 0.98841 1.62278 1.17135 1.12944 1.36717 0.92929 0.91741 0.90461 0.91412 0.94239 0.84210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.26 12.45 55.43 0.69 -24.57 14 2 C 0.07 2.05 5.41 -17.82 -0.10 1.95 14 3 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 14 4 H -0.29 -6.83 7.11 56.52 0.40 -6.42 14 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 14 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 14 7 C -0.51 -14.05 8.78 -34.44 -0.30 -14.36 14 8 H 0.06 1.60 7.77 -52.49 -0.41 1.19 14 9 C 0.21 5.28 3.11 -67.34 -0.21 5.07 14 10 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 14 11 C -0.14 -3.05 6.26 -24.59 -0.15 -3.21 14 12 C 0.06 1.11 4.74 -24.91 -0.12 0.99 14 13 H 0.08 1.32 8.14 -51.93 -0.42 0.90 14 14 F -0.22 -4.26 17.19 2.25 0.04 -4.22 14 15 C 0.02 0.46 7.40 -2.84 -0.02 0.44 14 16 N -0.66 -15.87 6.65 -105.05 -0.70 -16.57 14 17 H 0.26 7.11 8.31 -40.82 -0.34 6.77 14 18 H 0.06 1.25 8.14 -51.93 -0.42 0.83 14 19 H 0.08 1.72 8.05 -51.93 -0.42 1.30 14 20 H 0.07 1.36 8.10 -51.93 -0.42 0.94 14 21 H 0.04 0.69 8.14 -51.93 -0.42 0.27 14 22 H 0.34 8.34 8.35 -39.29 -0.33 8.01 14 LS Contribution 195.99 15.07 2.95 2.95 Total: -1.00 -28.41 195.99 -5.34 -33.75 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -2.40 Total: 1.34 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -0.90 Total: -9.11 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: -0.01 Total: -41.14 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.04 Total: -4.22 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 2.95 Total: 2.95 kcal Total: -28.41 -5.34 -33.75 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222031020.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.336 kcal (2) G-P(sol) polarization free energy of solvation -28.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.05 seconds