Wall clock time and date at job start Mon Mar 30 2020 02:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86803 * 120.00000 * 2 1 4 4 H 1.48500 * 109.46681 * 275.37911 * 3 2 1 5 5 H 1.48494 * 109.47047 * 35.38100 * 3 2 1 6 6 H 1.48507 * 109.46953 * 155.38380 * 3 2 1 7 7 C 1.39936 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99739 * 342.11072 * 7 2 1 9 9 C 1.41105 * 120.00111 * 162.11318 * 7 2 1 10 10 C 1.40650 * 120.73517 * 330.02602 * 9 7 2 11 11 N 1.31462 * 120.46307 * 180.02562 * 10 9 7 12 12 C 1.32290 * 122.22683 * 359.97438 * 11 10 9 13 13 C 1.37998 * 121.45659 * 359.97438 * 12 11 10 14 14 C 1.39197 * 119.32130 * 0.02562 * 13 12 11 15 15 N 1.38414 * 120.99527 * 179.73079 * 14 13 12 16 16 H 0.96999 * 119.99741 * 0.02562 * 1 2 3 17 17 H 1.07999 * 119.76662 * 0.02562 * 10 9 7 18 18 H 1.08000 * 119.27013 * 179.97438 * 12 11 10 19 19 H 1.07999 * 120.33416 * 180.02562 * 13 12 11 20 20 H 0.96990 * 120.00231 * 359.97438 * 15 14 13 21 21 H 0.97007 * 119.99454 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3765 2.1120 -1.3939 5 1 1.5017 2.6171 0.8106 6 1 3.5926 1.4100 0.5832 7 6 2.0084 -1.2119 0.0005 8 1 1.5076 -2.1244 0.2883 9 6 3.3683 -1.2416 -0.3748 10 6 3.8785 -0.3152 -1.3020 11 7 5.1463 -0.3480 -1.6482 12 6 5.9905 -1.2369 -1.1511 13 6 5.5819 -2.1843 -0.2347 14 6 4.2520 -2.2064 0.1759 15 7 3.8035 -3.1449 1.0891 16 1 -0.4850 0.8401 -0.0004 17 1 3.2241 0.4283 -1.7326 18 1 7.0224 -1.2208 -1.4695 19 1 6.2867 -2.9013 0.1598 20 1 4.4188 -3.8005 1.4526 21 1 2.8735 -3.1473 1.3649 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238661214.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:13 Heat of formation + Delta-G solvation = -2.176277 kcal Electronic energy + Delta-G solvation = -8813.968098 eV Core-core repulsion = 7074.108094 eV Total energy + Delta-G solvation = -1739.860004 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 164.064 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.41718 -36.04307 -35.44201 -32.36308 -30.42250 -27.13114 -23.96641 -22.59183 -19.52321 -18.26559 -17.97071 -16.74905 -15.45450 -15.30543 -15.09788 -14.60378 -14.39215 -13.76783 -12.90423 -12.71529 -12.24489 -12.12701 -11.69955 -11.13232 -9.97076 -9.61930 -8.87731 -8.71885 -6.33955 0.65714 0.98357 1.28467 1.40274 1.46345 2.11565 2.67355 3.32754 3.58656 4.04290 4.36729 4.62583 4.86656 5.14774 5.24844 5.38328 5.50593 6.04153 6.21621 6.44592 6.74566 6.91369 7.28688 7.72832 8.19969 Molecular weight = 164.06amu Principal moments of inertia in cm(-1) A = 0.055462 B = 0.023766 C = 0.018108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.732041 B = 1177.860853 C = 1545.903814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.054 3.946 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.467 4.467 8 H 0.071 0.929 9 C -0.029 4.029 10 C -0.032 4.032 11 N -0.523 5.523 12 C 0.024 3.976 13 C -0.230 4.230 14 C 0.164 3.836 15 N -0.854 5.854 16 H 0.292 0.708 17 H 0.119 0.881 18 H 0.162 0.838 19 H 0.146 0.854 20 H 0.404 0.596 21 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.116 -2.198 2.419 6.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.160 4.160 3 Si 0.781 3.219 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.498 4.498 8 H 0.089 0.911 9 C -0.036 4.036 10 C -0.188 4.188 11 N -0.235 5.235 12 C -0.136 4.136 13 C -0.256 4.256 14 C 0.051 3.949 15 N -0.396 5.396 16 H 0.103 0.897 17 H 0.136 0.864 18 H 0.179 0.821 19 H 0.164 0.836 20 H 0.234 0.766 21 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 6.105 -1.456 1.810 6.532 hybrid contribution -0.590 -0.171 0.790 1.000 sum 5.515 -1.627 2.600 6.311 Atomic orbital electron populations 1.69708 1.08600 1.31131 1.38021 1.26517 0.95186 1.03284 0.91038 0.85630 0.79030 0.78101 0.79134 1.19152 1.20009 1.19316 1.19017 0.93376 0.95630 1.41765 0.91055 1.18478 0.94179 0.95490 0.95447 1.22215 0.92587 1.03162 1.00804 1.67031 1.04201 1.25141 1.27131 1.22293 0.99202 0.93737 0.98350 1.21413 0.94381 1.04684 1.05164 1.18350 0.92587 0.92451 0.91527 1.41823 1.13952 1.35289 1.48521 0.89718 0.86419 0.82086 0.83643 0.76629 0.77215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.68 13.93 21.83 0.30 -45.38 14 2 C 0.05 2.88 5.41 85.25 0.46 3.34 14 3 Si 0.96 44.40 24.53 68.60 1.68 46.08 14 4 H -0.27 -12.13 6.72 99.48 0.67 -11.47 14 5 H -0.27 -11.79 7.11 99.48 0.71 -11.08 14 6 H -0.27 -13.19 6.85 99.48 0.68 -12.51 14 7 C -0.47 -25.14 8.99 23.39 0.21 -24.93 14 8 H 0.07 3.94 7.11 -2.91 -0.02 3.92 14 9 C -0.03 -1.46 5.12 -21.07 -0.11 -1.57 14 10 C -0.03 -1.66 8.37 85.34 0.71 -0.95 14 11 N -0.52 -25.44 10.33 -194.02 -2.00 -27.45 14 12 C 0.02 1.01 11.15 84.57 0.94 1.95 14 13 C -0.23 -8.87 9.97 22.44 0.22 -8.64 14 14 C 0.16 7.12 6.84 39.26 0.27 7.39 14 15 N -0.85 -30.03 8.98 -50.04 -0.45 -30.48 14 16 H 0.29 14.30 8.30 -92.71 -0.77 13.53 14 17 H 0.12 6.18 4.75 -2.91 -0.01 6.16 14 18 H 0.16 5.30 8.06 -2.91 -0.02 5.28 14 19 H 0.15 4.34 8.06 -2.91 -0.02 4.32 14 20 H 0.40 10.82 8.85 -92.72 -0.82 10.00 14 21 H 0.40 14.44 7.28 -92.70 -0.68 13.77 14 Total: -1.00 -60.67 186.72 1.96 -58.71 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: -0.29 Total: 21.92 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 2.71 Total: -23.41 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -2.15 Total: -103.30 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.68 Total: 46.08 kcal Total: -60.67 1.96 -58.71 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238661214.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.535 kcal (2) G-P(sol) polarization free energy of solvation -60.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds