Wall clock time and date at job start Mon Mar 30 2020 01:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99893 * 2 1 4 4 H 1.48495 * 109.46944 * 240.00231 * 3 2 1 5 5 H 1.48500 * 109.46863 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46772 * 120.00412 * 3 2 1 7 7 C 1.37878 * 120.00309 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00088 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99803 * 0.02562 * 7 2 1 10 10 H 1.08995 * 110.45935 * 57.39193 * 9 7 2 11 11 C 1.54483 * 110.50576 * 294.64169 * 9 7 2 12 12 O 1.44430 * 104.79653 * 217.37737 * 11 9 7 13 13 C 1.44421 * 105.27998 * 40.51450 * 12 11 9 14 14 C 1.54487 * 104.79872 * 319.48571 * 13 12 11 15 15 H 1.09002 * 110.50613 * 142.62453 * 14 13 12 16 16 N 1.46898 * 110.50842 * 265.19625 * 14 13 12 17 17 H 0.96999 * 119.99987 * 359.97438 * 1 2 3 18 18 H 1.08999 * 110.37607 * 336.20423 * 11 9 7 19 19 H 1.08997 * 110.37296 * 98.43982 * 11 9 7 20 20 H 1.08997 * 110.37554 * 200.65421 * 13 12 11 21 21 H 1.09004 * 110.37353 * 78.31569 * 13 12 11 22 22 H 1.00900 * 111.00209 * 298.54263 * 16 14 13 23 23 H 1.00894 * 111.00156 * 62.50392 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.5844 -2.5534 -0.8622 11 6 0.4575 -2.6671 1.3131 12 8 0.5561 -4.0736 1.6263 13 6 1.9176 -4.4389 1.3124 14 6 2.2336 -3.6915 -0.0022 15 1 3.2644 -3.3371 -0.0015 16 7 1.9907 -4.5619 -1.1603 17 1 -0.4850 0.8400 0.0004 18 1 0.9065 -2.0694 2.1063 19 1 -0.5841 -2.3813 1.1667 20 1 1.9971 -5.5160 1.1651 21 1 2.5905 -4.1129 2.1056 22 1 2.5871 -5.3753 -1.1328 23 1 1.0189 -4.8278 -1.2153 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257876769.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:26 Heat of formation + Delta-G solvation = -77.374940 kcal Electronic energy + Delta-G solvation = -8864.112986 eV Core-core repulsion = 7096.876645 eV Total energy + Delta-G solvation = -1767.236341 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 157.084 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.26285 -35.33670 -34.58205 -31.07337 -28.37498 -26.56549 -23.31806 -21.31114 -18.84950 -17.16715 -16.59026 -16.17456 -16.02738 -15.94541 -14.60393 -14.05039 -13.41205 -13.07384 -12.87321 -12.43428 -12.34698 -12.00840 -11.35785 -11.06183 -10.78667 -10.54275 -9.41452 -8.19400 -6.29063 1.42918 1.44609 1.52348 2.41322 3.12952 3.26067 3.81141 4.04279 4.25445 4.44381 4.58971 4.83789 4.93587 5.06084 5.30732 5.56259 5.79495 5.89245 6.27426 6.38185 6.74891 6.81366 7.38983 8.91168 Molecular weight = 157.08amu Principal moments of inertia in cm(-1) A = 0.078990 B = 0.018327 C = 0.016880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.391795 B = 1527.433068 C = 1658.352175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.011 3.989 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.532 4.532 8 H 0.060 0.940 9 C 0.024 3.976 10 H 0.015 0.985 11 C 0.073 3.927 12 O -0.409 6.409 13 C 0.015 3.985 14 C 0.066 3.934 15 H 0.083 0.917 16 N -0.838 5.838 17 H 0.264 0.736 18 H 0.036 0.964 19 H 0.063 0.937 20 H 0.105 0.895 21 H 0.059 0.941 22 H 0.347 0.653 23 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.042 -5.286 1.379 6.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.787 3.213 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.570 4.570 8 H 0.078 0.922 9 C 0.004 3.996 10 H 0.033 0.967 11 C -0.004 4.004 12 O -0.329 6.329 13 C -0.063 4.063 14 C -0.046 4.046 15 H 0.101 0.899 16 N -0.368 5.368 17 H 0.073 0.927 18 H 0.054 0.946 19 H 0.081 0.919 20 H 0.123 0.877 21 H 0.078 0.922 22 H 0.161 0.839 23 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.968 -4.686 1.012 6.223 hybrid contribution -0.045 0.459 0.634 0.784 sum 3.923 -4.226 1.645 5.997 Atomic orbital electron populations 1.70057 1.07372 1.27807 1.50807 1.25843 0.95766 1.02825 0.94394 0.85550 0.78310 0.78475 0.78996 1.19602 1.20981 1.19250 1.21396 0.93090 0.91161 1.51344 0.92205 1.19947 0.93330 0.93032 0.93247 0.96670 1.23387 1.00255 0.79390 0.97351 1.88938 1.29826 1.26465 1.87669 1.24348 0.83970 1.00390 0.97635 1.22866 1.00215 0.93408 0.88127 0.89853 1.58814 1.11083 1.23357 1.43537 0.92722 0.94590 0.91861 0.87661 0.92240 0.83860 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.56 12.65 21.45 0.27 -53.29 14 2 C 0.01 0.60 5.35 84.65 0.45 1.06 14 3 Si 0.96 43.34 29.54 68.60 2.03 45.37 14 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 14 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 14 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 14 7 C -0.53 -29.28 8.39 25.60 0.21 -29.07 14 8 H 0.06 3.19 7.38 -2.91 -0.02 3.17 14 9 C 0.02 1.20 2.70 -10.52 -0.03 1.18 14 10 H 0.02 0.87 7.93 -2.39 -0.02 0.85 14 11 C 0.07 3.63 6.42 72.49 0.47 4.10 14 12 O -0.41 -18.02 11.65 -148.98 -1.74 -19.76 14 13 C 0.02 0.55 7.34 72.49 0.53 1.08 14 14 C 0.07 2.68 3.90 45.93 0.18 2.86 14 15 H 0.08 3.41 7.46 -2.39 -0.02 3.39 14 16 N -0.84 -29.29 9.23 -164.47 -1.52 -30.81 14 17 H 0.26 14.58 8.31 -92.71 -0.77 13.81 14 18 H 0.04 1.86 7.86 -2.39 -0.02 1.84 14 19 H 0.06 3.36 8.08 -2.39 -0.02 3.34 14 20 H 0.11 3.05 8.04 -2.39 -0.02 3.03 14 21 H 0.06 2.05 8.14 -2.38 -0.02 2.03 14 22 H 0.35 9.41 9.04 -89.69 -0.81 8.60 14 23 H 0.34 11.79 8.93 -89.70 -0.80 10.99 14 Total: -1.00 -60.69 199.67 0.46 -60.22 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -0.40 Total: 17.06 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 1.82 Total: -18.80 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -1.25 Total: -84.10 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -1.74 Total: -19.76 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -60.69 0.46 -60.22 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257876769.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.151 kcal (2) G-P(sol) polarization free energy of solvation -60.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds