Wall clock time and date at job start Mon Mar 30 2020 01:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99797 * 2 1 4 4 H 1.48507 * 109.47265 * 269.72931 * 3 2 1 5 5 H 1.48496 * 109.47281 * 29.72716 * 3 2 1 6 6 H 1.48500 * 109.47112 * 149.72717 * 3 2 1 7 7 C 1.37872 * 120.00314 * 179.73005 * 2 1 3 8 8 H 1.07993 * 120.00545 * 175.44549 * 7 2 1 9 9 C 1.50704 * 119.99748 * 355.44237 * 7 2 1 10 10 H 1.08997 * 109.47022 * 35.20143 * 9 7 2 11 11 C 1.53003 * 109.47148 * 275.20211 * 9 7 2 12 12 F 1.39900 * 109.47331 * 173.86985 * 11 9 7 13 13 C 1.52999 * 109.47350 * 155.20446 * 9 7 2 14 14 C 1.52999 * 117.49620 * 248.74945 * 13 9 7 15 15 C 1.52991 * 117.49957 * 180.08463 * 13 9 7 16 16 H 0.97004 * 119.99961 * 185.18928 * 1 2 3 17 17 H 1.09003 * 109.47008 * 293.87051 * 11 9 7 18 18 H 1.09003 * 109.47182 * 53.86770 * 11 9 7 19 19 H 1.09002 * 115.54583 * 34.41338 * 13 9 7 20 20 H 1.08998 * 117.50164 * 359.97438 * 14 13 9 21 21 H 1.09002 * 117.49929 * 145.02461 * 14 13 9 22 22 H 1.09003 * 117.50076 * 214.97540 * 15 13 9 23 23 H 1.09000 * 117.50053 * 359.97438 * 15 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5023 2.0432 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4419 0.7058 7 6 2.0046 -1.1940 0.0056 8 1 3.0819 -1.1958 -0.0686 9 6 1.2546 -2.4965 0.1155 10 1 0.3070 -2.4162 -0.4171 11 6 0.9866 -2.8080 1.5893 12 9 0.1718 -3.9411 1.6858 13 6 2.0915 -3.6203 -0.4992 14 6 1.5854 -4.2476 -1.7997 15 6 1.4983 -5.0304 -0.4871 16 1 -0.4850 -0.8366 0.0760 17 1 1.9318 -2.9957 2.0987 18 1 0.4854 -1.9593 2.0547 19 1 3.1700 -3.5268 -0.3719 20 1 0.6561 -3.8600 -2.2171 21 1 2.3309 -4.5673 -2.5277 22 1 2.1865 -5.8649 -0.3522 23 1 0.5120 -5.1578 -0.0408 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257877834.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:53 Heat of formation + Delta-G solvation = -64.979332 kcal Electronic energy + Delta-G solvation = -8794.797034 eV Core-core repulsion = 6942.752334 eV Total energy + Delta-G solvation = -1852.044700 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 158.080 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -48.45499 -38.56882 -35.40186 -31.37200 -26.57877 -24.26643 -23.18908 -21.26155 -19.12335 -17.00627 -16.65867 -16.03845 -15.66147 -15.43575 -15.07286 -14.09167 -13.32529 -12.78654 -12.57393 -12.29882 -12.10045 -11.91506 -11.44210 -11.21121 -10.88431 -10.46381 -10.42659 -8.66082 -6.40195 1.55369 1.63128 1.81209 2.55879 2.96789 3.19335 3.85724 4.13210 4.14906 4.21281 4.30207 4.52712 4.62056 4.77303 4.97081 5.15324 5.25187 5.31136 5.57076 6.03215 6.15318 6.56850 7.41197 8.71796 Molecular weight = 158.08amu Principal moments of inertia in cm(-1) A = 0.067281 B = 0.018307 C = 0.016091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.065496 B = 1529.126468 C = 1739.734385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.030 4.030 3 Si 1.119 2.881 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.600 4.600 8 H 0.055 0.945 9 C 0.025 3.975 10 H 0.009 0.991 11 C 0.073 3.927 12 F -0.237 7.237 13 C -0.145 4.145 14 C -0.178 4.178 15 C -0.177 4.177 16 H 0.257 0.743 17 H 0.075 0.925 18 H 0.044 0.956 19 H 0.096 0.904 20 H 0.072 0.928 21 H 0.109 0.891 22 H 0.110 0.890 23 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.394 -4.716 0.256 6.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.228 4.228 3 Si 0.940 3.060 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.638 4.638 8 H 0.073 0.927 9 C 0.006 3.994 10 H 0.027 0.973 11 C 0.018 3.982 12 F -0.219 7.219 13 C -0.163 4.163 14 C -0.215 4.215 15 C -0.214 4.214 16 H 0.067 0.933 17 H 0.093 0.907 18 H 0.063 0.937 19 H 0.114 0.886 20 H 0.091 0.909 21 H 0.127 0.873 22 H 0.128 0.872 23 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.179 -3.123 0.193 5.221 hybrid contribution -0.201 -1.658 0.065 1.671 sum 3.978 -4.781 0.258 6.225 Atomic orbital electron populations 1.70906 1.07958 1.30345 1.48024 1.27365 0.96479 1.06616 0.92379 0.82912 0.74301 0.71088 0.77698 1.20124 1.21074 1.19078 1.22164 0.94880 0.91947 1.54795 0.92694 1.18995 0.95242 0.94092 0.91054 0.97301 1.22365 0.92377 0.82524 1.00970 1.92603 1.76329 1.55393 1.97543 1.22288 0.99008 0.93389 1.01646 1.22923 1.02597 1.04678 0.91331 1.23102 1.02947 0.94714 1.00614 0.93273 0.90653 0.93728 0.88591 0.90938 0.87294 0.87222 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.44 13.63 21.45 0.29 -56.14 14 2 C -0.03 -1.67 5.46 84.65 0.46 -1.21 14 3 Si 1.12 48.79 29.91 68.60 2.05 50.84 14 4 H -0.28 -11.46 7.11 99.48 0.71 -10.75 14 5 H -0.29 -12.42 7.11 99.48 0.71 -11.71 14 6 H -0.27 -10.61 7.11 99.48 0.71 -9.90 14 7 C -0.60 -32.74 8.30 25.60 0.21 -32.53 14 8 H 0.05 2.93 7.76 -2.91 -0.02 2.91 14 9 C 0.03 1.27 1.99 -11.54 -0.02 1.25 14 10 H 0.01 0.50 6.44 -2.39 -0.02 0.48 14 11 C 0.07 3.38 6.85 71.98 0.49 3.88 14 12 F -0.24 -10.58 14.90 44.97 0.67 -9.91 14 13 C -0.15 -6.14 5.13 -10.80 -0.06 -6.19 14 14 C -0.18 -6.63 10.18 30.62 0.31 -6.32 14 15 C -0.18 -6.33 9.50 30.62 0.29 -6.04 14 16 H 0.26 15.80 6.66 -92.71 -0.62 15.18 14 17 H 0.08 3.18 8.14 -2.39 -0.02 3.16 14 18 H 0.04 2.21 8.14 -2.39 -0.02 2.19 14 19 H 0.10 3.93 8.07 -2.39 -0.02 3.91 14 20 H 0.07 2.88 8.05 -2.39 -0.02 2.86 14 21 H 0.11 3.41 8.14 -2.39 -0.02 3.39 14 22 H 0.11 3.25 8.14 -2.39 -0.02 3.23 14 23 H 0.09 3.33 6.44 -2.39 -0.02 3.31 14 Total: -1.00 -60.14 203.14 6.04 -54.10 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: 1.33 Total: 8.26 kcal Atomic # 6 Polarization: -48.85 SS G_CDS: 1.69 Total: -47.16 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.29 Total: -56.14 kcal Atomic # 9 Polarization: -10.58 SS G_CDS: 0.67 Total: -9.91 kcal Atomic # 14 Polarization: 48.79 SS G_CDS: 2.05 Total: 50.84 kcal Total: -60.14 6.04 -54.10 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257877834.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.875 kcal (2) G-P(sol) polarization free energy of solvation -60.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds