Wall clock time and date at job start Mon Mar 30 2020 01:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 119.99872 * 2 1 4 4 H 1.48504 * 109.47168 * 264.64711 * 3 2 1 5 5 H 1.48501 * 109.47286 * 24.64729 * 3 2 1 6 6 H 1.48497 * 109.47293 * 144.64647 * 3 2 1 7 7 C 1.37872 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00051 * 4.79948 * 7 2 1 9 9 C 1.50708 * 119.99947 * 184.80170 * 7 2 1 10 10 H 1.09001 * 109.46997 * 4.93928 * 9 7 2 11 11 C 1.53006 * 109.47037 * 124.93658 * 9 7 2 12 12 F 1.39898 * 109.47288 * 294.98226 * 11 9 7 13 13 C 1.53000 * 109.46919 * 244.93463 * 9 7 2 14 14 C 1.52997 * 117.51364 * 111.28426 * 13 9 7 15 15 C 1.53002 * 117.49619 * 179.91307 * 13 9 7 16 16 H 0.97000 * 120.00322 * 359.97438 * 1 2 3 17 17 H 1.08999 * 109.46963 * 54.98025 * 11 9 7 18 18 H 1.08999 * 109.46726 * 174.97995 * 11 9 7 19 19 H 1.08991 * 115.55266 * 325.58405 * 13 9 7 20 20 H 1.08996 * 117.50203 * 214.96997 * 14 13 9 21 21 H 1.09002 * 117.50373 * 359.97438 * 14 13 9 22 22 H 1.08998 * 117.49873 * 359.97438 * 15 13 9 23 23 H 1.08998 * 117.50058 * 145.00064 * 15 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.6097 1.9811 -1.3940 5 1 1.3945 2.6827 0.5839 6 1 3.4855 1.4755 0.8101 7 6 2.0045 -1.1940 -0.0005 8 1 1.4674 -2.1277 -0.0792 9 6 3.5076 -1.1963 0.1087 10 1 3.8620 -0.1776 0.2665 11 6 3.9318 -2.0724 1.2892 12 9 3.4753 -1.5011 2.4818 13 6 4.1119 -1.7523 -1.1822 14 6 4.8804 -0.7798 -2.0791 15 6 5.6372 -1.8350 -1.2699 16 1 -0.4850 0.8400 0.0004 17 1 3.5025 -3.0678 1.1755 18 1 5.0190 -2.1463 1.3145 19 1 3.5365 -2.5390 -1.6699 20 1 4.8105 -0.9267 -3.1569 21 1 4.9552 0.2566 -1.7498 22 1 6.2101 -1.4928 -0.4080 23 1 6.0652 -2.6761 -1.8152 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257877835.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:54 Heat of formation + Delta-G solvation = -41.143118 kcal Electronic energy + Delta-G solvation = -8794.224465 eV Core-core repulsion = 6943.213381 eV Total energy + Delta-G solvation = -1851.011084 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 158.080 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -46.42771 -37.09246 -32.78709 -30.27151 -25.09786 -22.15304 -21.65427 -19.11555 -17.25775 -15.22077 -14.68505 -14.43769 -14.29228 -13.38103 -13.12760 -12.35737 -11.69028 -11.09143 -10.93248 -10.54771 -10.35254 -10.04116 -9.71113 -9.67890 -8.99700 -8.86778 -8.48988 -6.07883 -4.08135 3.30893 3.37675 3.38182 4.42677 4.49444 5.18388 5.41151 5.64307 5.69143 5.86089 6.02056 6.10512 6.23927 6.36746 6.52903 6.64249 6.74568 7.10012 7.24441 7.72063 8.47349 8.94743 9.55007 11.05339 Molecular weight = 158.08amu Principal moments of inertia in cm(-1) A = 0.043933 B = 0.025972 C = 0.020729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.187225 B = 1077.845373 C = 1350.459748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.076 3.924 3 Si 0.877 3.123 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.507 4.507 8 H 0.075 0.925 9 C -0.001 4.001 10 H 0.052 0.948 11 C 0.076 3.924 12 F -0.223 7.223 13 C -0.116 4.116 14 C -0.185 4.185 15 C -0.205 4.205 16 H 0.264 0.736 17 H 0.060 0.940 18 H 0.044 0.956 19 H 0.100 0.900 20 H 0.085 0.915 21 H 0.084 0.916 22 H 0.085 0.915 23 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.970 -1.351 -1.362 9.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.126 4.126 3 Si 0.705 3.295 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.544 4.544 8 H 0.093 0.907 9 C -0.020 4.020 10 H 0.070 0.930 11 C 0.021 3.979 12 F -0.204 7.204 13 C -0.135 4.135 14 C -0.222 4.222 15 C -0.242 4.242 16 H 0.074 0.926 17 H 0.078 0.922 18 H 0.062 0.938 19 H 0.118 0.882 20 H 0.104 0.896 21 H 0.102 0.898 22 H 0.104 0.896 23 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.775 -1.216 -1.334 8.959 hybrid contribution 0.349 0.940 -0.082 1.006 sum 9.124 -0.276 -1.415 9.237 Atomic orbital electron populations 1.69893 1.06292 1.27049 1.50308 1.25063 0.94713 0.98978 0.93874 0.86862 0.80236 0.83706 0.78661 1.19993 1.21490 1.18933 1.20809 0.88174 0.94791 1.50614 0.90712 1.19556 0.97760 0.95840 0.88827 0.93018 1.22044 0.96174 0.97612 0.82073 1.92679 1.91339 1.87347 1.49070 1.22687 0.90348 1.00734 0.99682 1.22845 1.06167 0.95788 0.97407 1.22981 0.96903 1.01553 1.02771 0.92583 0.92183 0.93802 0.88199 0.89648 0.89777 0.89619 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.81 13.96 55.43 0.77 -27.04 14 2 C 0.08 2.23 5.47 -17.82 -0.10 2.13 14 3 Si 0.88 22.11 27.38 -169.99 -4.66 17.45 14 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 14 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 14 6 H -0.26 -6.47 6.20 56.52 0.35 -6.12 14 7 C -0.51 -14.31 8.68 -34.44 -0.30 -14.61 14 8 H 0.07 2.27 8.06 -52.49 -0.42 1.85 14 9 C 0.00 -0.01 2.16 -91.76 -0.20 -0.21 14 10 H 0.05 1.27 4.24 -51.93 -0.22 1.05 14 11 C 0.08 1.62 6.81 37.16 0.25 1.87 14 12 F -0.22 -5.37 17.18 2.25 0.04 -5.33 14 13 C -0.12 -2.33 5.13 -90.62 -0.47 -2.79 14 14 C -0.19 -3.34 10.18 -26.73 -0.27 -3.62 14 15 C -0.21 -3.36 9.67 -26.73 -0.26 -3.61 14 16 H 0.26 7.68 8.31 -40.82 -0.34 7.34 14 17 H 0.06 1.21 8.14 -51.93 -0.42 0.79 14 18 H 0.04 0.79 7.13 -51.93 -0.37 0.42 14 19 H 0.10 2.01 8.11 -51.93 -0.42 1.59 14 20 H 0.09 1.39 8.14 -51.93 -0.42 0.96 14 21 H 0.08 1.57 8.05 -51.93 -0.42 1.15 14 22 H 0.09 1.35 7.59 -51.93 -0.39 0.95 14 23 H 0.08 1.19 8.14 -51.93 -0.42 0.76 14 LS Contribution 202.96 15.07 3.06 3.06 Total: -1.00 -30.24 202.96 -4.82 -35.06 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: -2.70 Total: -2.36 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -1.34 Total: -20.85 kcal Atomic # 7 Polarization: -27.81 SS G_CDS: 0.77 Total: -27.04 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.04 Total: -5.33 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.66 Total: 17.45 kcal Total LS contribution 3.06 Total: 3.06 kcal Total: -30.24 -4.82 -35.06 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257877835.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.079 kcal (2) G-P(sol) polarization free energy of solvation -30.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds