Wall clock time and date at job start Mon Mar 30 2020 01:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 119.99872 * 2 1 4 4 H 1.48504 * 109.47168 * 264.64711 * 3 2 1 5 5 H 1.48501 * 109.47286 * 24.64729 * 3 2 1 6 6 H 1.48497 * 109.47293 * 144.64647 * 3 2 1 7 7 C 1.37872 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00051 * 4.79948 * 7 2 1 9 9 C 1.50708 * 119.99947 * 184.80170 * 7 2 1 10 10 H 1.09001 * 109.46997 * 4.93928 * 9 7 2 11 11 C 1.53006 * 109.47037 * 124.93658 * 9 7 2 12 12 F 1.39898 * 109.47288 * 294.98226 * 11 9 7 13 13 C 1.53000 * 109.46919 * 244.93463 * 9 7 2 14 14 C 1.52997 * 117.51364 * 111.28426 * 13 9 7 15 15 C 1.53002 * 117.49619 * 179.91307 * 13 9 7 16 16 H 0.97000 * 120.00322 * 359.97438 * 1 2 3 17 17 H 1.08999 * 109.46963 * 54.98025 * 11 9 7 18 18 H 1.08999 * 109.46726 * 174.97995 * 11 9 7 19 19 H 1.08991 * 115.55266 * 325.58405 * 13 9 7 20 20 H 1.08996 * 117.50203 * 214.96997 * 14 13 9 21 21 H 1.09002 * 117.50373 * 359.97438 * 14 13 9 22 22 H 1.08998 * 117.49873 * 359.97438 * 15 13 9 23 23 H 1.08998 * 117.50058 * 145.00064 * 15 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.6097 1.9811 -1.3940 5 1 1.3945 2.6827 0.5839 6 1 3.4855 1.4755 0.8101 7 6 2.0045 -1.1940 -0.0005 8 1 1.4674 -2.1277 -0.0792 9 6 3.5076 -1.1963 0.1087 10 1 3.8620 -0.1776 0.2665 11 6 3.9318 -2.0724 1.2892 12 9 3.4753 -1.5011 2.4818 13 6 4.1119 -1.7523 -1.1822 14 6 4.8804 -0.7798 -2.0791 15 6 5.6372 -1.8350 -1.2699 16 1 -0.4850 0.8400 0.0004 17 1 3.5025 -3.0678 1.1755 18 1 5.0190 -2.1463 1.3145 19 1 3.5365 -2.5390 -1.6699 20 1 4.8105 -0.9267 -3.1569 21 1 4.9552 0.2566 -1.7498 22 1 6.2101 -1.4928 -0.4080 23 1 6.0652 -2.6761 -1.8152 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257877835.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:54 Heat of formation + Delta-G solvation = -59.985889 kcal Electronic energy + Delta-G solvation = -8795.041549 eV Core-core repulsion = 6943.213381 eV Total energy + Delta-G solvation = -1851.828168 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 158.080 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -48.24718 -38.63132 -34.86749 -32.15909 -27.09264 -23.86944 -23.01475 -20.81424 -19.36756 -16.94450 -16.50426 -16.29733 -15.96779 -15.11464 -14.90025 -14.35219 -13.56411 -12.90757 -12.49858 -12.20208 -12.04697 -11.84680 -11.73650 -11.25855 -10.93917 -10.60083 -10.43685 -8.31062 -6.34707 1.30974 1.33936 1.41782 2.32874 2.97089 3.15574 3.87803 4.18379 4.27012 4.29545 4.33081 4.61579 4.76419 4.85674 4.96942 5.11303 5.34920 5.43362 5.51453 5.67024 6.24732 6.70958 7.31182 8.86115 Molecular weight = 158.08amu Principal moments of inertia in cm(-1) A = 0.043933 B = 0.025972 C = 0.020729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.187225 B = 1077.845373 C = 1350.459748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.012 3.988 3 Si 0.939 3.061 4 H -0.258 1.258 5 H -0.289 1.289 6 H -0.250 1.250 7 C -0.509 4.509 8 H 0.034 0.966 9 C -0.002 4.002 10 H 0.046 0.954 11 C 0.071 3.929 12 F -0.241 7.241 13 C -0.148 4.148 14 C -0.190 4.190 15 C -0.167 4.167 16 H 0.265 0.735 17 H 0.064 0.936 18 H 0.090 0.910 19 H 0.090 0.910 20 H 0.102 0.898 21 H 0.078 0.922 22 H 0.099 0.901 23 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.678 -1.014 -1.765 11.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.185 4.185 3 Si 0.764 3.236 4 H -0.182 1.182 5 H -0.216 1.216 6 H -0.174 1.174 7 C -0.546 4.546 8 H 0.052 0.948 9 C -0.021 4.021 10 H 0.064 0.936 11 C 0.016 3.984 12 F -0.223 7.223 13 C -0.166 4.166 14 C -0.227 4.227 15 C -0.203 4.203 16 H 0.074 0.926 17 H 0.083 0.917 18 H 0.108 0.892 19 H 0.108 0.892 20 H 0.120 0.880 21 H 0.097 0.903 22 H 0.118 0.882 23 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.509 -0.895 -1.741 11.674 hybrid contribution -0.507 0.718 0.034 0.879 sum 11.002 -0.178 -1.707 11.135 Atomic orbital electron populations 1.70047 1.08191 1.28011 1.52776 1.25969 0.95503 1.03026 0.94024 0.85866 0.79193 0.78879 0.79670 1.18237 1.21564 1.17417 1.21139 0.91151 0.93102 1.49255 0.94810 1.19520 0.94502 0.96445 0.91661 0.93563 1.22226 0.98891 0.97050 0.80212 1.92644 1.91818 1.87637 1.50187 1.22338 0.93351 1.02198 0.98754 1.22984 1.05679 0.95654 0.98372 1.23088 0.93438 1.01243 1.02554 0.92578 0.91732 0.89218 0.89210 0.87967 0.90297 0.88249 0.86911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.71 13.96 21.44 0.30 -60.41 14 2 C 0.01 0.70 5.47 84.65 0.46 1.16 14 3 Si 0.94 45.36 27.38 68.60 1.88 47.24 14 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 14 5 H -0.29 -13.88 7.11 99.48 0.71 -13.17 14 6 H -0.25 -11.37 6.20 99.48 0.62 -10.75 14 7 C -0.51 -29.29 8.68 25.60 0.22 -29.07 14 8 H 0.03 2.15 8.06 -2.91 -0.02 2.12 14 9 C 0.00 -0.10 2.16 -11.54 -0.02 -0.12 14 10 H 0.05 2.15 4.24 -2.39 -0.01 2.14 14 11 C 0.07 2.87 6.81 71.98 0.49 3.36 14 12 F -0.24 -11.31 17.18 44.97 0.77 -10.54 14 13 C -0.15 -5.59 5.13 -10.79 -0.06 -5.65 14 14 C -0.19 -6.19 10.18 30.59 0.31 -5.87 14 15 C -0.17 -4.63 9.67 30.60 0.30 -4.34 14 16 H 0.27 15.88 8.31 -92.71 -0.77 15.11 14 17 H 0.06 2.52 8.14 -2.39 -0.02 2.50 14 18 H 0.09 2.83 7.13 -2.39 -0.02 2.81 14 19 H 0.09 3.54 8.11 -2.39 -0.02 3.52 14 20 H 0.10 2.95 8.14 -2.39 -0.02 2.93 14 21 H 0.08 2.66 8.05 -2.39 -0.02 2.64 14 22 H 0.10 2.54 7.59 -2.39 -0.02 2.52 14 23 H 0.11 2.54 8.14 -2.39 -0.02 2.52 14 Total: -1.00 -66.04 202.96 5.75 -60.29 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: 1.09 Total: 3.96 kcal Atomic # 6 Polarization: -42.24 SS G_CDS: 1.70 Total: -40.53 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: 0.30 Total: -60.41 kcal Atomic # 9 Polarization: -11.31 SS G_CDS: 0.77 Total: -10.54 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.24 kcal Total: -66.04 5.75 -60.29 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257877835.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.302 kcal (2) G-P(sol) polarization free energy of solvation -66.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds