Wall clock time and date at job start Mon Mar 30 2020 02:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00312 * 2 1 4 4 H 1.48495 * 109.46971 * 270.00107 * 3 2 1 5 5 H 1.48497 * 109.46603 * 29.99848 * 3 2 1 6 6 H 1.48494 * 109.47383 * 150.00015 * 3 2 1 7 7 C 1.37878 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00057 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99992 * 359.97438 * 7 2 1 10 10 H 1.09002 * 113.40450 * 50.33374 * 9 7 2 11 11 S 1.83083 * 114.38186 * 276.70076 * 9 7 2 12 12 C 1.83082 * 83.53539 * 226.54770 * 11 9 7 13 13 C 1.55885 * 114.37977 * 183.96715 * 9 7 2 14 14 H 1.09007 * 110.81983 * 256.17053 * 13 9 7 15 15 O 1.42898 * 110.82542 * 19.10177 * 13 9 7 16 16 H 0.96999 * 119.99748 * 359.97438 * 1 2 3 17 17 H 1.09006 * 114.38378 * 133.41599 * 12 11 9 18 18 H 1.09007 * 114.38441 * 266.59191 * 12 11 9 19 19 H 0.96706 * 114.00205 * 179.97438 * 15 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 1 0.4813 -2.5554 -0.7680 11 16 0.7053 -3.0553 1.6584 12 6 1.3849 -4.6657 1.1139 13 6 2.1560 -3.7646 0.1004 14 1 2.2421 -4.2559 -0.8688 15 8 3.4498 -3.4259 0.6038 16 1 -0.4850 0.8401 0.0004 17 1 2.0192 -5.1588 1.8507 18 1 0.6527 -5.3322 0.6578 19 1 4.0503 -4.1796 0.6842 RHF calculation, no. of doubly occupied orbitals= 26 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259523026.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:07 Heat of formation + Delta-G solvation = -57.193180 kcal Electronic energy + Delta-G solvation = -7204.711221 eV Core-core repulsion = 5620.239663 eV Total energy + Delta-G solvation = -1584.471558 eV No. of doubly occupied orbitals = 26 Molecular weight (most abundant/longest-lived isotopes) = 160.030 amu Computer time = 0.05 seconds Orbital eigenvalues (eV) -38.47299 -35.13948 -32.92196 -29.26295 -25.33731 -21.85130 -19.01368 -18.28536 -16.95765 -16.35230 -15.43723 -14.74693 -14.25960 -13.99604 -13.47510 -12.90482 -12.56315 -12.35165 -11.99853 -11.57983 -11.19863 -10.74818 -9.74339 -8.44010 -8.25270 -6.38187 1.14620 1.40476 1.44843 1.54715 1.96959 2.34642 3.20241 3.50729 3.74567 4.10240 4.42439 4.58851 4.78570 5.12923 5.60641 5.98003 6.65759 7.07111 7.25332 8.71705 Molecular weight = 160.03amu Principal moments of inertia in cm(-1) A = 0.081462 B = 0.020637 C = 0.017971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.635606 B = 1356.454829 C = 1557.700074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.013 3.987 3 Si 0.976 3.024 4 H -0.260 1.260 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.476 4.476 8 H 0.078 0.922 9 C 0.136 3.864 10 H 0.061 0.939 11 S -0.525 6.525 12 C -0.075 4.075 13 C 0.099 3.901 14 H 0.077 0.923 15 O -0.548 6.548 16 H 0.270 0.730 17 H 0.118 0.882 18 H 0.117 0.883 19 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.127 -6.096 -1.723 8.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.193 4.193 3 Si 0.799 3.201 4 H -0.184 1.184 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.519 4.519 8 H 0.096 0.904 9 C 0.014 3.986 10 H 0.079 0.921 11 S -0.299 6.299 12 C -0.224 4.224 13 C 0.038 3.962 14 H 0.095 0.905 15 O -0.354 6.354 16 H 0.079 0.921 17 H 0.136 0.864 18 H 0.135 0.865 19 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 4.075 -4.963 -0.603 6.450 hybrid contribution 0.501 -0.137 -0.606 0.798 sum 4.577 -5.100 -1.209 6.958 Atomic orbital electron populations 1.70108 1.07964 1.28678 1.46542 1.26134 0.95767 1.03861 0.93531 0.85272 0.78419 0.77312 0.79050 1.18441 1.20845 1.19141 1.21118 0.94055 0.89549 1.47173 0.90418 1.22047 0.93946 0.95807 0.86752 0.92141 1.89213 1.85736 1.14952 1.39958 1.25299 1.01560 0.94498 1.00994 1.23666 0.84869 0.92533 0.95135 0.90491 1.86714 1.22758 1.38012 1.87894 0.92080 0.86358 0.86510 0.76700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.10 13.29 21.45 0.28 -52.81 13 2 C 0.01 0.70 5.46 84.65 0.46 1.17 13 3 Si 0.98 43.83 29.54 68.60 2.03 45.86 13 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 13 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 13 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 13 7 C -0.48 -26.79 8.53 25.60 0.22 -26.57 13 8 H 0.08 4.35 6.93 -2.91 -0.02 4.33 13 9 C 0.14 7.10 4.18 30.85 0.13 7.23 13 10 H 0.06 3.32 8.14 -2.39 -0.02 3.30 13 11 S -0.52 -27.18 23.61 -56.49 -1.33 -28.51 13 12 C -0.08 -2.66 8.82 73.03 0.64 -2.02 13 13 C 0.10 3.90 4.22 32.64 0.14 4.04 13 14 H 0.08 2.54 8.14 -2.38 -0.02 2.52 13 15 O -0.55 -21.16 11.88 -148.98 -1.77 -22.93 13 16 H 0.27 15.03 8.31 -92.71 -0.77 14.26 13 17 H 0.12 3.54 8.14 -2.38 -0.02 3.52 13 18 H 0.12 3.49 8.14 -2.38 -0.02 3.47 13 19 H 0.38 9.64 9.12 -74.05 -0.68 8.97 13 Total: -1.00 -68.69 187.79 1.38 -67.31 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 0.58 Total: 7.23 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 1.59 Total: -16.14 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.28 Total: -52.81 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -1.77 Total: -22.93 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -27.18 SS G_CDS: -1.33 Total: -28.51 kcal Total: -68.69 1.38 -67.31 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259523026.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.118 kcal (2) G-P(sol) polarization free energy of solvation -68.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.05 seconds