Wall clock time and date at job start Mon Mar 30 2020 01:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00109 * 2 1 4 4 H 1.48499 * 109.46964 * 273.68426 * 3 2 1 5 5 H 1.48499 * 109.47177 * 33.68204 * 3 2 1 6 6 H 1.48500 * 109.47437 * 153.68429 * 3 2 1 7 7 C 1.37879 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99994 * 186.40602 * 7 2 1 9 9 C 1.50693 * 120.00057 * 6.68505 * 7 2 1 10 10 H 1.08997 * 110.27534 * 302.88463 * 9 7 2 11 11 C 1.53997 * 110.30809 * 64.97279 * 9 7 2 12 12 N 1.47895 * 107.05921 * 117.69230 * 11 9 7 13 13 C 1.48532 * 105.82190 * 25.32819 * 12 11 9 14 14 C 1.54591 * 110.31284 * 180.79356 * 9 7 2 15 15 H 1.09002 * 110.72443 * 337.48771 * 14 9 7 16 16 F 1.39897 * 110.72688 * 100.76754 * 14 9 7 17 17 H 0.96998 * 120.00010 * 359.97438 * 1 2 3 18 18 H 1.09007 * 109.91771 * 237.04627 * 11 9 7 19 19 H 1.09000 * 109.91700 * 358.13710 * 11 9 7 20 20 H 1.00907 * 111.00360 * 145.84481 * 12 11 9 21 21 H 1.09005 * 110.66736 * 79.23200 * 13 12 11 22 22 H 1.09001 * 110.66969 * 202.18850 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4187 2.0914 -1.3972 5 1 1.4877 2.6290 0.7764 6 1 3.5835 1.4190 0.6207 7 6 2.0045 -1.1941 0.0005 8 1 3.0795 -1.1969 0.1049 9 6 1.2587 -2.4947 -0.1508 10 1 0.5061 -2.5919 0.6316 11 6 0.5988 -2.5740 -1.5400 12 7 1.2029 -3.7270 -2.2421 13 6 1.6750 -4.6479 -1.1767 14 6 2.2423 -3.6863 -0.1001 15 1 3.2505 -3.3657 -0.3624 16 9 2.2258 -4.2885 1.1626 17 1 -0.4850 0.8400 0.0004 18 1 -0.4753 -2.7256 -1.4327 19 1 0.7903 -1.6556 -2.0949 20 1 0.5279 -4.1808 -2.8394 21 1 0.8447 -5.2278 -0.7736 22 1 2.4548 -5.3080 -1.5565 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259588414.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:39 Heat of formation + Delta-G solvation = -57.564215 kcal Electronic energy + Delta-G solvation = -8955.395485 eV Core-core repulsion = 7038.246418 eV Total energy + Delta-G solvation = -1917.149067 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 159.075 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -46.65466 -37.04696 -32.76624 -29.11833 -27.56686 -24.26662 -20.83031 -19.63045 -16.68800 -16.12423 -15.00276 -14.45468 -13.59170 -13.21079 -13.14411 -12.58158 -11.88314 -11.76147 -11.07952 -10.81311 -10.46697 -10.23815 -9.99364 -9.12207 -9.06638 -8.50163 -7.79127 -6.10077 -4.12526 3.29606 3.36247 3.39995 4.39633 4.96153 5.21426 5.29225 5.62929 5.93696 6.03428 6.32041 6.44069 6.60165 6.92877 7.25499 7.50025 7.75482 7.88843 8.01744 8.28692 8.88094 9.50971 11.00351 Molecular weight = 159.08amu Principal moments of inertia in cm(-1) A = 0.071294 B = 0.018681 C = 0.016810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.644837 B = 1498.459892 C = 1665.250538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.060 0.940 9 C 0.020 3.980 10 H 0.047 0.953 11 C 0.062 3.938 12 N -0.674 5.674 13 C 0.015 3.985 14 C 0.082 3.918 15 H 0.089 0.911 16 F -0.223 7.223 17 H 0.262 0.738 18 H 0.021 0.979 19 H 0.082 0.918 20 H 0.324 0.676 21 H 0.040 0.960 22 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.615 -4.720 -2.284 5.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.551 4.551 8 H 0.078 0.922 9 C 0.001 3.999 10 H 0.065 0.935 11 C -0.067 4.067 12 N -0.303 5.303 13 C -0.115 4.115 14 C 0.046 3.954 15 H 0.107 0.893 16 F -0.204 7.204 17 H 0.072 0.928 18 H 0.040 0.960 19 H 0.100 0.900 20 H 0.139 0.861 21 H 0.058 0.942 22 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.096 -4.284 -2.406 5.342 hybrid contribution -0.548 0.517 0.363 0.837 sum 1.548 -3.767 -2.042 4.556 Atomic orbital electron populations 1.69974 1.06002 1.26878 1.49885 1.24986 0.94890 0.99334 0.94726 0.86514 0.79934 0.83103 0.78103 1.20517 1.21232 1.19755 1.21060 0.93439 0.89983 1.50651 0.92162 1.20060 0.93756 0.92423 0.93710 0.93535 1.22846 0.94868 0.92619 0.96349 1.63094 1.40450 1.08440 1.18281 1.23494 0.99290 0.95287 0.93419 1.22805 1.02398 0.93294 0.76951 0.89321 1.92699 1.98127 1.85348 1.44181 0.92814 0.96029 0.89957 0.86142 0.94184 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.58 12.88 55.43 0.71 -24.87 14 2 C 0.06 1.75 5.06 -17.82 -0.09 1.66 14 3 Si 0.90 21.34 29.54 -169.99 -5.02 16.31 14 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 14 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 14 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 14 7 C -0.51 -14.29 8.32 -34.44 -0.29 -14.58 14 8 H 0.06 1.66 7.55 -52.48 -0.40 1.26 14 9 C 0.02 0.51 2.62 -90.42 -0.24 0.27 14 10 H 0.05 1.32 8.12 -51.93 -0.42 0.89 14 11 C 0.06 1.46 6.61 -2.76 -0.02 1.44 14 12 N -0.67 -13.35 7.51 -109.99 -0.83 -14.17 14 13 C 0.02 0.29 7.36 -1.81 -0.01 0.28 14 14 C 0.08 1.83 4.41 -24.79 -0.11 1.72 14 15 H 0.09 1.95 7.68 -51.93 -0.40 1.55 14 16 F -0.22 -5.05 17.20 2.25 0.04 -5.01 14 17 H 0.26 7.15 8.31 -40.82 -0.34 6.81 14 18 H 0.02 0.50 8.14 -51.93 -0.42 0.08 14 19 H 0.08 2.13 7.44 -51.93 -0.39 1.74 14 20 H 0.32 5.44 8.92 -39.29 -0.35 5.09 14 21 H 0.04 0.72 8.14 -51.93 -0.42 0.30 14 22 H 0.07 1.23 8.14 -51.93 -0.42 0.80 14 LS Contribution 195.27 15.07 2.94 2.94 Total: -1.00 -28.75 195.27 -5.26 -34.02 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -2.36 Total: -0.01 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -0.75 Total: -9.21 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: -0.11 Total: -39.04 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.04 Total: -5.01 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 2.94 Total: 2.94 kcal Total: -28.75 -5.26 -34.02 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259588414.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.547 kcal (2) G-P(sol) polarization free energy of solvation -28.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds