Wall clock time and date at job start Mon Mar 30 2020 01:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99918 * 2 1 4 4 H 1.48493 * 109.47124 * 270.00008 * 3 2 1 5 5 H 1.48503 * 109.46623 * 30.00029 * 3 2 1 6 6 H 1.48494 * 109.47202 * 149.99665 * 3 2 1 7 7 C 1.37869 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00342 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00163 * 359.97438 * 7 2 1 10 10 H 1.09002 * 113.47950 * 305.61244 * 9 7 2 11 11 S 1.83134 * 114.45206 * 79.50588 * 9 7 2 12 12 C 1.83140 * 83.21248 * 93.78624 * 11 9 7 13 13 C 1.53811 * 81.98112 * 19.49290 * 12 11 9 14 14 O 1.20758 * 127.76110 * 155.99056 * 13 12 11 15 15 H 0.96993 * 120.00122 * 0.02562 * 1 2 3 16 16 H 1.09002 * 114.44843 * 132.76674 * 12 11 9 17 17 H 1.08997 * 114.45222 * 266.17423 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.5302 -2.5844 0.8125 11 16 0.6086 -3.0035 -1.6396 12 6 2.1829 -3.9351 -1.7283 13 6 2.1327 -3.7433 -0.2030 14 8 2.6661 -4.4175 0.6450 15 1 -0.4850 0.8400 -0.0004 16 1 2.0773 -4.9691 -2.0567 17 1 2.9946 -3.4029 -2.2242 RHF calculation, no. of doubly occupied orbitals= 25 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259620357.mol2 17 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:15 Heat of formation + Delta-G solvation = -25.427153 kcal Electronic energy + Delta-G solvation = -6709.906440 eV Core-core repulsion = 5154.123839 eV Total energy + Delta-G solvation = -1555.782601 eV No. of doubly occupied orbitals = 25 Molecular weight (most abundant/longest-lived isotopes) = 158.014 amu Computer time = 0.04 seconds Orbital eigenvalues (eV) -38.30466 -33.59857 -31.33301 -27.48826 -23.81041 -18.83307 -17.10039 -15.64327 -15.01829 -14.53310 -14.18087 -13.40087 -12.56037 -12.13608 -11.43445 -11.32878 -10.83487 -10.64240 -10.14559 -9.17933 -8.78914 -8.62326 -6.78314 -6.40578 -4.54057 2.45741 2.82720 3.09968 3.19926 3.23427 3.52834 4.10680 4.62312 5.07927 5.55005 5.90720 6.04725 6.85262 7.41261 7.59847 8.01283 8.41356 9.03517 10.56055 Molecular weight = 158.01amu Principal moments of inertia in cm(-1) A = 0.077087 B = 0.020532 C = 0.018479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.139754 B = 1363.427968 C = 1514.885885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.075 3.925 3 Si 0.916 3.084 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.477 4.477 8 H 0.077 0.923 9 C 0.103 3.897 10 H 0.094 0.906 11 S -0.401 6.401 12 C -0.118 4.118 13 C 0.354 3.646 14 O -0.458 6.458 15 H 0.274 0.726 16 H 0.105 0.895 17 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.017 -1.057 -1.667 3.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.137 4.137 3 Si 0.741 3.259 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.522 4.522 8 H 0.095 0.905 9 C -0.018 4.018 10 H 0.111 0.889 11 S -0.170 6.170 12 C -0.267 4.267 13 C 0.224 3.776 14 O -0.332 6.332 15 H 0.084 0.916 16 H 0.123 0.877 17 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.939 -1.178 -2.033 3.046 hybrid contribution 1.062 0.651 0.330 1.288 sum 3.000 -0.528 -1.703 3.490 Atomic orbital electron populations 1.69964 1.06580 1.28492 1.42605 1.25145 0.95036 1.00238 0.93269 0.86192 0.79784 0.81090 0.78810 1.19796 1.20541 1.19104 1.20723 0.93454 0.87824 1.50173 0.90455 1.22965 0.94066 0.93601 0.91209 0.88866 1.88829 1.24607 1.63305 1.40296 1.25434 0.99683 1.03151 0.98439 1.28237 0.74937 0.85102 0.89321 1.90271 1.40387 1.50079 1.52428 0.91606 0.87675 0.86229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.91 13.29 55.43 0.74 -22.18 13 2 C 0.07 1.93 5.46 -17.82 -0.10 1.84 13 3 Si 0.92 19.62 29.54 -169.99 -5.02 14.60 13 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 13 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 13 6 H -0.27 -5.59 7.11 56.52 0.40 -5.18 13 7 C -0.48 -12.42 8.95 -34.44 -0.31 -12.73 13 8 H 0.08 1.94 7.81 -52.49 -0.41 1.53 13 9 C 0.10 2.61 4.19 -27.46 -0.11 2.50 13 10 H 0.09 2.47 8.14 -51.93 -0.42 2.04 13 11 S -0.40 -9.66 23.73 -107.50 -2.55 -12.21 13 12 C -0.12 -2.32 9.06 37.58 0.34 -1.98 13 13 C 0.35 8.07 7.46 -25.89 -0.19 7.87 13 14 O -0.46 -10.97 17.99 6.00 0.11 -10.86 13 15 H 0.27 6.95 8.31 -40.82 -0.34 6.61 13 16 H 0.10 1.76 8.14 -51.93 -0.42 1.34 13 17 H 0.12 2.13 8.14 -51.93 -0.42 1.71 13 LS Contribution 181.54 15.07 2.74 2.74 Total: -1.00 -28.10 181.54 -5.18 -33.28 By element: Atomic # 1 Polarization: -2.06 SS G_CDS: -0.81 Total: -2.87 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -0.37 Total: -2.49 kcal Atomic # 7 Polarization: -22.91 SS G_CDS: 0.74 Total: -22.18 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.11 Total: -10.86 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Atomic # 16 Polarization: -9.66 SS G_CDS: -2.55 Total: -12.21 kcal Total LS contribution 2.74 Total: 2.74 kcal Total: -28.10 -5.18 -33.28 kcal The number of atoms in the molecule is 17 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259620357.mol2 17 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.855 kcal (2) G-P(sol) polarization free energy of solvation -28.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.04 seconds