Wall clock time and date at job start Mon Mar 30 2020 01:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00334 * 2 1 4 4 H 1.48498 * 109.47179 * 270.00155 * 3 2 1 5 5 H 1.48496 * 109.46988 * 30.00149 * 3 2 1 6 6 H 1.48503 * 109.46814 * 150.00240 * 3 2 1 7 7 C 1.37878 * 119.99394 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99736 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00329 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47162 * 179.97438 * 9 7 2 11 11 H 1.08995 * 112.52140 * 314.79894 * 10 9 7 12 12 C 1.53043 * 113.14695 * 184.99933 * 10 9 7 13 13 C 1.53038 * 89.91037 * 211.86793 * 12 10 9 14 14 S 1.81425 * 89.89299 * 32.87165 * 13 12 10 15 15 H 0.97007 * 119.99105 * 359.97438 * 1 2 3 16 16 H 1.09004 * 109.46905 * 59.99976 * 9 7 2 17 17 H 1.08996 * 109.46861 * 300.00050 * 9 7 2 18 18 H 1.09002 * 113.15312 * 96.59316 * 12 10 9 19 19 H 1.09003 * 113.15158 * 327.14430 * 12 10 9 20 20 H 1.08999 * 113.15289 * 148.13384 * 13 12 10 21 21 H 1.09002 * 113.15157 * 277.57313 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5469 1.4399 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0018 11 1 3.0550 -3.5182 -0.7168 12 6 1.5703 -5.0303 -0.1245 13 6 2.6819 -5.6520 0.7239 14 16 2.8294 -4.1041 1.6587 15 1 -0.4849 0.8402 0.0004 16 1 0.6239 -2.5567 -0.8903 17 1 0.6246 -2.5570 0.8897 18 1 1.5495 -5.4078 -1.1469 19 1 0.5921 -5.0703 0.3547 20 1 2.3394 -6.4890 1.3324 21 1 3.5761 -5.8929 0.1490 RHF calculation, no. of doubly occupied orbitals= 26 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259653039.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:34 Heat of formation + Delta-G solvation = 3.504965 kcal Electronic energy + Delta-G solvation = -6845.368363 eV Core-core repulsion = 5426.673447 eV Total energy + Delta-G solvation = -1418.694916 eV No. of doubly occupied orbitals = 26 Molecular weight (most abundant/longest-lived isotopes) = 158.046 amu Computer time = 0.04 seconds Orbital eigenvalues (eV) -36.12468 -32.85424 -29.29007 -24.70633 -21.94048 -20.63502 -16.55404 -15.96862 -14.70197 -13.85081 -13.10459 -12.88249 -12.62299 -11.68911 -11.29944 -10.96200 -10.92698 -10.51922 -10.22354 -9.40028 -9.24581 -9.01210 -8.36486 -7.05620 -6.02284 -4.04635 2.49567 2.82117 3.32116 3.38309 3.43170 4.45393 4.99554 5.28947 5.34604 5.67493 5.77931 5.93560 6.11995 6.54616 6.63255 7.53903 7.67902 7.94379 8.34283 8.99769 9.59320 11.08925 Molecular weight = 158.05amu Principal moments of inertia in cm(-1) A = 0.102634 B = 0.015047 C = 0.014008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 272.749556 B = 1860.331995 C = 1998.368992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.031 3.969 10 C -0.025 4.025 11 H 0.096 0.904 12 C -0.125 4.125 13 C -0.093 4.093 14 S -0.309 6.309 15 H 0.261 0.739 16 H 0.031 0.969 17 H 0.032 0.968 18 H 0.079 0.921 19 H 0.095 0.905 20 H 0.084 0.916 21 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.139 -7.858 -0.874 8.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.007 4.007 10 C -0.153 4.153 11 H 0.114 0.886 12 C -0.164 4.164 13 C -0.242 4.242 14 S -0.085 6.085 15 H 0.071 0.929 16 H 0.049 0.951 17 H 0.050 0.950 18 H 0.097 0.903 19 H 0.114 0.886 20 H 0.103 0.897 21 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.361 -7.193 0.427 7.951 hybrid contribution 0.268 0.592 -0.972 1.169 sum 3.629 -6.601 -0.545 7.552 Atomic orbital electron populations 1.69961 1.06032 1.26712 1.50671 1.24988 0.94853 0.99260 0.95148 0.86572 0.79937 0.83342 0.78094 1.20607 1.21155 1.19836 1.21184 0.93025 0.90824 1.50915 0.92625 1.19197 0.93103 0.90083 0.98296 1.24347 1.01315 0.99109 0.90574 0.88577 1.22957 0.98591 0.94498 1.00374 1.24080 1.01788 0.98763 0.99553 1.88946 1.91050 1.06990 1.21511 0.92922 0.95076 0.94992 0.90296 0.88622 0.89688 0.88960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.02 13.29 55.43 0.74 -26.28 14 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 14 3 Si 0.89 22.08 29.54 -169.99 -5.02 17.05 14 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 14 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 14 6 H -0.27 -6.72 7.11 56.52 0.40 -6.31 14 7 C -0.52 -14.95 9.10 -34.44 -0.31 -15.26 14 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 14 9 C 0.03 0.80 4.77 -27.88 -0.13 0.67 14 10 C -0.03 -0.53 3.46 -26.71 -0.09 -0.62 14 11 H 0.10 1.95 8.13 -51.93 -0.42 1.53 14 12 C -0.13 -2.03 7.19 -26.69 -0.19 -2.22 14 13 C -0.09 -1.41 7.98 37.18 0.30 -1.11 14 14 S -0.31 -6.38 24.31 -107.50 -2.61 -9.00 14 15 H 0.26 7.44 8.31 -40.82 -0.34 7.10 14 16 H 0.03 0.83 8.14 -51.93 -0.42 0.41 14 17 H 0.03 0.89 8.04 -51.93 -0.42 0.48 14 18 H 0.08 1.08 8.14 -51.93 -0.42 0.66 14 19 H 0.10 1.57 8.12 -51.93 -0.42 1.14 14 20 H 0.08 1.12 8.14 -51.93 -0.42 0.70 14 21 H 0.09 1.23 8.14 -51.93 -0.42 0.81 14 LS Contribution 199.31 15.07 3.00 3.00 Total: -1.00 -30.49 199.31 -6.92 -37.41 By element: Atomic # 1 Polarization: -2.76 SS G_CDS: -2.49 Total: -5.26 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -0.53 Total: -16.94 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: -6.38 SS G_CDS: -2.61 Total: -9.00 kcal Total LS contribution 3.00 Total: 3.00 kcal Total: -30.49 -6.92 -37.41 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259653039.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.917 kcal (2) G-P(sol) polarization free energy of solvation -30.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.05 seconds