Wall clock time and date at job start Mon Mar 30 2020 01:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00334 * 2 1 4 4 H 1.48498 * 109.47179 * 270.00155 * 3 2 1 5 5 H 1.48496 * 109.46988 * 30.00149 * 3 2 1 6 6 H 1.48503 * 109.46814 * 150.00240 * 3 2 1 7 7 C 1.37878 * 119.99394 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99736 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00329 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47162 * 179.97438 * 9 7 2 11 11 H 1.08995 * 112.52140 * 314.79894 * 10 9 7 12 12 C 1.53043 * 113.14695 * 184.99933 * 10 9 7 13 13 C 1.53038 * 89.91037 * 211.86793 * 12 10 9 14 14 S 1.81425 * 89.89299 * 32.87165 * 13 12 10 15 15 H 0.97007 * 119.99105 * 359.97438 * 1 2 3 16 16 H 1.09004 * 109.46905 * 59.99976 * 9 7 2 17 17 H 1.08996 * 109.46861 * 300.00050 * 9 7 2 18 18 H 1.09002 * 113.15312 * 96.59316 * 12 10 9 19 19 H 1.09003 * 113.15158 * 327.14430 * 12 10 9 20 20 H 1.08999 * 113.15289 * 148.13384 * 13 12 10 21 21 H 1.09002 * 113.15157 * 277.57313 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5469 1.4399 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0018 11 1 3.0550 -3.5182 -0.7168 12 6 1.5703 -5.0303 -0.1245 13 6 2.6819 -5.6520 0.7239 14 16 2.8294 -4.1041 1.6587 15 1 -0.4849 0.8402 0.0004 16 1 0.6239 -2.5567 -0.8903 17 1 0.6246 -2.5570 0.8897 18 1 1.5495 -5.4078 -1.1469 19 1 0.5921 -5.0703 0.3547 20 1 2.3394 -6.4890 1.3324 21 1 3.5761 -5.8929 0.1490 RHF calculation, no. of doubly occupied orbitals= 26 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259653039.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:34 Heat of formation + Delta-G solvation = -15.395115 kcal Electronic energy + Delta-G solvation = -6846.187932 eV Core-core repulsion = 5426.673447 eV Total energy + Delta-G solvation = -1419.514485 eV No. of doubly occupied orbitals = 26 Molecular weight (most abundant/longest-lived isotopes) = 158.046 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -37.67125 -34.95981 -31.22164 -26.62334 -23.51145 -22.33461 -18.60949 -17.65171 -16.68208 -15.39175 -14.74191 -14.69006 -14.30705 -13.36364 -13.13080 -12.88624 -12.48828 -12.40022 -12.07711 -11.46631 -10.99293 -10.73080 -10.51733 -8.68847 -8.24101 -6.34375 1.17230 1.19085 1.36283 1.37931 1.48902 2.37740 3.09777 3.63911 4.02288 4.29643 4.49626 4.61553 4.79899 4.91682 5.15837 5.37210 5.54272 5.74678 6.15873 6.78732 7.34001 8.87372 Molecular weight = 158.05amu Principal moments of inertia in cm(-1) A = 0.102634 B = 0.015047 C = 0.014008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 272.749556 B = 1860.331995 C = 1998.368992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.961 3.039 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.541 4.541 8 H 0.051 0.949 9 C 0.037 3.963 10 C -0.023 4.023 11 H 0.102 0.898 12 C -0.113 4.113 13 C -0.055 4.055 14 S -0.394 6.394 15 H 0.265 0.735 16 H 0.016 0.984 17 H -0.001 1.001 18 H 0.116 0.884 19 H 0.090 0.910 20 H 0.113 0.887 21 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.012 -8.757 -1.596 9.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.786 3.214 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.579 4.579 8 H 0.070 0.930 9 C -0.001 4.001 10 C -0.151 4.151 11 H 0.120 0.880 12 C -0.152 4.152 13 C -0.203 4.203 14 S -0.171 6.171 15 H 0.074 0.926 16 H 0.034 0.966 17 H 0.017 0.983 18 H 0.134 0.866 19 H 0.109 0.891 20 H 0.131 0.869 21 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.240 -8.107 -0.301 9.154 hybrid contribution -0.015 0.821 -0.755 1.115 sum 4.225 -7.286 -1.055 8.488 Atomic orbital electron populations 1.70075 1.07565 1.27827 1.51472 1.25891 0.95774 1.03106 0.94665 0.85499 0.78455 0.78727 0.78718 1.19148 1.20595 1.19586 1.21562 0.93088 0.92445 1.50806 0.93029 1.19006 0.93549 0.91604 0.95896 1.24323 1.00638 0.99735 0.90406 0.88006 1.22896 0.98409 0.91114 1.02781 1.24150 1.02302 0.95935 0.97882 1.89244 1.91244 1.13341 1.23228 0.92646 0.96612 0.98257 0.86628 0.89127 0.86872 0.86134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.97 13.29 21.45 0.28 -56.68 14 2 C 0.00 0.22 5.46 84.65 0.46 0.68 14 3 Si 0.96 45.44 29.54 68.60 2.03 47.46 14 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 14 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 14 6 H -0.27 -12.60 7.11 99.48 0.71 -11.90 14 7 C -0.54 -31.47 9.10 25.60 0.23 -31.24 14 8 H 0.05 2.97 7.74 -2.91 -0.02 2.94 14 9 C 0.04 1.96 4.77 29.85 0.14 2.11 14 10 C -0.02 -0.93 3.46 30.61 0.11 -0.82 14 11 H 0.10 3.99 8.13 -2.39 -0.02 3.97 14 12 C -0.11 -3.33 7.19 30.62 0.22 -3.11 14 13 C -0.05 -1.45 7.98 71.99 0.57 -0.88 14 14 S -0.39 -16.03 24.31 -56.49 -1.37 -17.40 14 15 H 0.26 15.22 8.31 -92.70 -0.77 14.45 14 16 H 0.02 0.86 8.14 -2.39 -0.02 0.84 14 17 H 0.00 -0.05 8.04 -2.39 -0.02 -0.07 14 18 H 0.12 2.63 8.14 -2.39 -0.02 2.61 14 19 H 0.09 2.78 8.12 -2.39 -0.02 2.76 14 20 H 0.11 2.45 8.14 -2.39 -0.02 2.43 14 21 H 0.12 2.60 8.14 -2.39 -0.02 2.58 14 Total: -1.00 -66.59 199.31 3.87 -62.72 By element: Atomic # 1 Polarization: -4.04 SS G_CDS: 1.19 Total: -2.84 kcal Atomic # 6 Polarization: -35.00 SS G_CDS: 1.74 Total: -33.26 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 0.28 Total: -56.68 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 16 Polarization: -16.03 SS G_CDS: -1.37 Total: -17.40 kcal Total: -66.59 3.87 -62.72 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259653039.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.328 kcal (2) G-P(sol) polarization free energy of solvation -66.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds