Wall clock time and date at job start Mon Mar 30 2020 02:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99733 * 2 1 4 4 H 1.48500 * 109.47011 * 240.00505 * 3 2 1 5 5 H 1.48504 * 109.46865 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47020 * 120.00424 * 3 2 1 7 7 C 1.37875 * 120.00694 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00843 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99715 * 359.97438 * 7 2 1 10 10 H 1.08999 * 110.79812 * 56.37887 * 9 7 2 11 11 C 1.54994 * 110.93855 * 292.73081 * 9 7 2 12 12 O 1.44586 * 103.58334 * 204.84274 * 11 9 7 13 13 C 1.43746 * 106.86832 * 39.87548 * 12 11 9 14 14 C 1.54105 * 107.42259 * 333.67423 * 13 12 11 15 15 H 1.08996 * 110.48968 * 120.63008 * 14 13 12 16 16 F 1.39902 * 110.48369 * 243.14807 * 14 13 12 17 17 H 0.96992 * 120.00521 * 359.97438 * 1 2 3 18 18 H 1.08999 * 110.61668 * 323.25916 * 11 9 7 19 19 H 1.08994 * 110.62187 * 86.10626 * 11 9 7 20 20 H 1.09002 * 109.87826 * 214.17174 * 13 12 11 21 21 H 1.08996 * 109.87812 * 93.17072 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2126 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 1 0.5687 -2.5521 -0.8488 11 6 0.4903 -2.6995 1.3349 12 8 0.3523 -4.1353 1.4349 13 6 1.5894 -4.7062 0.9767 14 6 2.2275 -3.7006 -0.0011 15 1 3.2107 -3.3934 0.3551 16 9 2.3235 -4.2562 -1.2815 17 1 -0.4850 0.8399 0.0004 18 1 1.0736 -2.3130 2.1706 19 1 -0.4872 -2.2190 1.2956 20 1 1.3954 -5.6489 0.4649 21 1 2.2557 -4.8743 1.8227 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259658999.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:13 Heat of formation + Delta-G solvation = -127.327682 kcal Electronic energy + Delta-G solvation = -9069.677162 eV Core-core repulsion = 7051.784262 eV Total energy + Delta-G solvation = -2017.892900 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 160.064 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -48.51232 -39.74629 -35.25424 -32.20860 -29.75950 -26.77891 -23.51022 -21.97964 -19.01594 -17.60921 -17.00073 -16.48341 -16.13916 -15.74694 -14.94767 -14.75347 -13.99317 -13.58374 -12.97385 -12.75984 -12.46954 -12.36683 -11.68378 -11.28588 -11.10118 -10.74175 -10.42781 -8.25488 -6.38539 1.43481 1.45079 1.53194 2.37746 3.06251 3.10977 3.57769 3.89234 4.13827 4.19622 4.49875 4.71603 4.79044 5.02404 5.26599 5.48941 5.68312 5.85646 6.16255 6.69384 7.30941 8.85123 Molecular weight = 160.06amu Principal moments of inertia in cm(-1) A = 0.075405 B = 0.018423 C = 0.016279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.237139 B = 1519.467887 C = 1719.607342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.015 3.985 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.542 4.542 8 H 0.068 0.932 9 C -0.007 4.007 10 H 0.016 0.984 11 C 0.071 3.929 12 O -0.406 6.406 13 C 0.027 3.973 14 C 0.054 3.946 15 H 0.107 0.893 16 F -0.224 7.224 17 H 0.267 0.733 18 H 0.055 0.945 19 H 0.075 0.925 20 H 0.100 0.900 21 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.337 -3.632 2.371 6.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.027 4.027 10 H 0.034 0.966 11 C -0.005 4.005 12 O -0.326 6.326 13 C -0.050 4.050 14 C 0.018 3.982 15 H 0.125 0.875 16 F -0.205 7.205 17 H 0.076 0.924 18 H 0.074 0.926 19 H 0.093 0.907 20 H 0.118 0.882 21 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.998 -3.650 2.418 5.928 hybrid contribution 0.235 0.997 -0.343 1.080 sum 4.233 -2.652 2.075 5.409 Atomic orbital electron populations 1.70048 1.07546 1.28240 1.49840 1.25882 0.95779 1.03065 0.93811 0.85454 0.78245 0.77901 0.79187 1.19629 1.20910 1.18773 1.21271 0.93361 0.90527 1.52763 0.91394 1.20702 0.93738 0.93355 0.94867 0.96613 1.23546 1.00946 0.78408 0.97649 1.88787 1.36009 1.21134 1.86698 1.23819 0.86948 0.96638 0.97560 1.23341 1.02353 0.94008 0.78547 0.87503 1.92716 1.97747 1.86948 1.43138 0.92383 0.92634 0.90653 0.88207 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.32 12.51 21.45 0.27 -52.06 14 2 C 0.01 0.80 5.37 84.66 0.45 1.26 14 3 Si 0.97 42.00 29.54 68.60 2.03 44.02 14 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 14 5 H -0.28 -12.13 7.11 99.48 0.71 -11.43 14 6 H -0.26 -10.86 7.11 99.48 0.71 -10.15 14 7 C -0.54 -29.08 8.49 25.60 0.22 -28.86 14 8 H 0.07 3.47 7.55 -2.91 -0.02 3.45 14 9 C -0.01 -0.38 2.75 -10.24 -0.03 -0.41 14 10 H 0.02 0.92 8.13 -2.39 -0.02 0.90 14 11 C 0.07 3.40 6.67 72.66 0.48 3.88 14 12 O -0.41 -17.76 11.54 -148.98 -1.72 -19.48 14 13 C 0.03 0.98 7.55 72.36 0.55 1.53 14 14 C 0.05 2.24 4.41 31.58 0.14 2.38 14 15 H 0.11 4.05 7.68 -2.39 -0.02 4.04 14 16 F -0.22 -9.76 17.11 44.97 0.77 -8.99 14 17 H 0.27 14.40 8.31 -92.71 -0.77 13.63 14 18 H 0.06 2.58 8.04 -2.39 -0.02 2.56 14 19 H 0.08 3.92 7.73 -2.39 -0.02 3.91 14 20 H 0.10 3.20 8.03 -2.39 -0.02 3.18 14 21 H 0.09 2.75 8.14 -2.39 -0.02 2.73 14 Total: -1.00 -59.11 190.87 4.37 -54.73 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: 1.21 Total: 1.99 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 1.81 Total: -20.22 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.27 Total: -52.06 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -1.72 Total: -19.48 kcal Atomic # 9 Polarization: -9.76 SS G_CDS: 0.77 Total: -8.99 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -59.11 4.37 -54.73 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259658999.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.594 kcal (2) G-P(sol) polarization free energy of solvation -59.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds