Wall clock time and date at job start Mon Mar 30 2020 01:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00049 * 2 1 4 4 H 1.48502 * 109.46842 * 270.00172 * 3 2 1 5 5 H 1.48502 * 109.47127 * 29.99547 * 3 2 1 6 6 H 1.48497 * 109.47271 * 149.99833 * 3 2 1 7 7 C 1.37879 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99751 * 176.66792 * 7 2 1 9 9 C 1.50699 * 120.00066 * 356.67345 * 7 2 1 10 10 C 1.53000 * 112.99695 * 295.04163 * 9 7 2 11 11 N 1.46901 * 109.47154 * 293.13444 * 10 9 7 12 12 C 1.54035 * 113.92965 * 66.97796 * 9 7 2 13 13 O 1.44185 * 85.51834 * 91.65921 * 12 9 7 14 14 C 1.44176 * 93.33933 * 24.19272 * 13 12 9 15 15 H 0.96998 * 120.00283 * 0.02562 * 1 2 3 16 16 H 1.09001 * 109.46777 * 173.13677 * 10 9 7 17 17 H 1.08999 * 109.46902 * 53.13673 * 10 9 7 18 18 H 1.00902 * 110.99550 * 174.40893 * 11 10 9 19 19 H 1.00896 * 111.00240 * 298.35825 * 11 10 9 20 20 H 1.08997 * 113.86559 * 205.80211 * 12 9 7 21 21 H 1.08998 * 113.86371 * 337.51451 * 12 9 7 22 22 H 1.09005 * 113.86865 * 221.65960 * 14 13 12 23 23 H 1.09000 * 113.98624 * 89.96423 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0831 -1.1949 -0.0538 9 6 1.2529 -2.4980 0.0768 10 6 0.5031 -2.6793 1.3981 11 7 1.4703 -2.8148 2.4955 12 6 0.3997 -2.8013 -1.1693 13 8 1.5657 -3.4932 -1.6599 14 6 2.0898 -3.7234 -0.3367 15 1 -0.4850 0.8400 -0.0004 16 1 -0.1144 -3.5760 1.3453 17 1 -0.1312 -1.8113 1.5779 18 1 1.0018 -2.8444 3.3887 19 1 2.0529 -3.6283 2.3656 20 1 -0.4506 -3.4544 -0.9733 21 1 0.1355 -1.9167 -1.7487 22 1 3.1659 -3.5702 -0.2557 23 1 1.7568 -4.6577 0.1154 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259807481.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:42 Heat of formation + Delta-G solvation = -37.522865 kcal Electronic energy + Delta-G solvation = -8989.522496 eV Core-core repulsion = 7224.014271 eV Total energy + Delta-G solvation = -1765.508225 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 157.084 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.02172 -35.64492 -34.08139 -30.35607 -27.14867 -26.70507 -24.52853 -20.67639 -18.02179 -17.17256 -16.81072 -16.28304 -15.95706 -15.36719 -14.90357 -14.01692 -13.61114 -13.28443 -12.73146 -12.62878 -12.18425 -11.47943 -11.24731 -10.81644 -10.60616 -10.12624 -9.20719 -8.07358 -6.12846 1.43934 1.45413 1.55186 2.47615 3.09917 3.32663 3.85349 4.39233 4.48828 4.53048 4.65942 4.73790 4.99668 5.33760 5.44277 5.54701 5.70115 5.89562 6.34556 6.63127 6.84099 6.94251 7.50387 8.99598 Molecular weight = 157.08amu Principal moments of inertia in cm(-1) A = 0.056376 B = 0.023875 C = 0.020867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.545893 B = 1172.489573 C = 1341.539274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.022 3.978 3 Si 0.951 3.049 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.485 4.485 8 H 0.046 0.954 9 C 0.024 3.976 10 C 0.083 3.917 11 N -0.839 5.839 12 C 0.042 3.958 13 O -0.412 6.412 14 C 0.033 3.967 15 H 0.260 0.740 16 H 0.006 0.994 17 H 0.058 0.942 18 H 0.338 0.662 19 H 0.336 0.664 20 H 0.066 0.934 21 H 0.064 0.936 22 H 0.077 0.923 23 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.839 -4.327 2.843 5.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.177 4.177 3 Si 0.777 3.223 4 H -0.208 1.208 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.523 4.523 8 H 0.064 0.936 9 C 0.023 3.977 10 C -0.048 4.048 11 N -0.369 5.369 12 C -0.036 4.036 13 O -0.331 6.331 14 C -0.044 4.044 15 H 0.069 0.931 16 H 0.024 0.976 17 H 0.077 0.923 18 H 0.150 0.850 19 H 0.149 0.851 20 H 0.084 0.916 21 H 0.082 0.918 22 H 0.095 0.905 23 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.061 -3.555 2.337 4.385 hybrid contribution -0.322 0.126 0.218 0.409 sum 0.739 -3.429 2.555 4.340 Atomic orbital electron populations 1.69981 1.06662 1.27061 1.51438 1.25508 0.95673 1.01652 0.94839 0.85673 0.78850 0.80014 0.77727 1.20760 1.20914 1.19759 1.20734 0.92261 0.90306 1.49026 0.93569 1.20981 0.92156 0.93436 0.91121 1.21626 0.93251 0.97458 0.92463 1.58364 1.26245 1.48090 1.04200 1.23941 0.88393 0.93872 0.97368 1.89430 1.38144 1.78162 1.27381 1.24145 0.99602 0.98108 0.82528 0.93110 0.97574 0.92329 0.84988 0.85113 0.91646 0.91761 0.90483 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.96 11.23 21.45 0.24 -50.72 14 2 C 0.02 1.21 5.23 84.66 0.44 1.65 14 3 Si 0.95 44.34 29.54 68.60 2.03 46.36 14 4 H -0.28 -12.97 7.11 99.48 0.71 -12.26 14 5 H -0.28 -12.93 7.11 99.48 0.71 -12.23 14 6 H -0.27 -12.57 7.11 99.48 0.71 -11.87 14 7 C -0.49 -26.61 8.18 25.60 0.21 -26.40 14 8 H 0.05 2.59 7.81 -2.91 -0.02 2.56 14 9 C 0.02 1.16 0.53 -52.23 -0.03 1.13 14 10 C 0.08 3.66 6.04 86.30 0.52 4.18 14 11 N -0.84 -31.68 9.46 -186.72 -1.77 -33.44 14 12 C 0.04 2.03 7.94 72.27 0.57 2.60 14 13 O -0.41 -19.98 12.40 -148.98 -1.85 -21.83 14 14 C 0.03 1.39 7.76 72.28 0.56 1.95 14 15 H 0.26 13.97 8.31 -92.71 -0.77 13.20 14 16 H 0.01 0.25 8.04 -2.39 -0.02 0.23 14 17 H 0.06 2.96 6.81 -2.39 -0.02 2.95 14 18 H 0.34 10.80 9.08 -89.69 -0.81 9.99 14 19 H 0.34 11.06 8.48 -89.70 -0.76 10.30 14 20 H 0.07 2.84 8.03 -2.39 -0.02 2.82 14 21 H 0.06 3.45 7.54 -2.39 -0.02 3.43 14 22 H 0.08 3.18 8.08 -2.38 -0.02 3.16 14 23 H 0.08 2.86 8.10 -2.39 -0.02 2.84 14 Total: -1.00 -59.97 199.89 0.58 -59.40 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -0.36 Total: 15.12 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 2.28 Total: -14.89 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -1.53 Total: -84.16 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -1.85 Total: -21.83 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -59.97 0.58 -59.40 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259807481.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.874 kcal (2) G-P(sol) polarization free energy of solvation -59.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds