Wall clock time and date at job start Mon Mar 30 2020 02:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86795 * 119.99990 * 2 1 4 4 H 1.48500 * 109.47363 * 269.99826 * 3 2 1 5 5 H 1.48496 * 109.47281 * 29.99795 * 3 2 1 6 6 H 1.48500 * 109.46806 * 149.99794 * 3 2 1 7 7 C 1.37874 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00015 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00116 * 180.02562 * 7 2 1 10 10 C 1.50699 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.38615 * 120.07365 * 125.25885 * 10 9 7 12 12 C 1.38880 * 117.96717 * 180.28685 * 11 10 9 13 13 C 1.38611 * 117.96736 * 359.45738 * 12 11 10 14 14 N 1.31938 * 119.84568 * 0.28403 * 13 12 11 15 15 N 1.28349 * 122.18457 * 359.97438 * 14 13 12 16 16 H 0.97001 * 119.99418 * 0.02562 * 1 2 3 17 17 H 1.08992 * 109.47362 * 59.99222 * 9 7 2 18 18 H 1.09005 * 109.46563 * 299.99297 * 9 7 2 19 19 H 1.08005 * 121.02224 * 0.02562 * 11 10 9 20 20 H 1.08002 * 121.02028 * 179.74070 * 12 11 10 21 21 H 1.08000 * 120.08030 * 180.29881 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0138 -2.6150 -0.0001 11 6 4.8986 -3.0389 -0.9793 12 6 5.3286 -4.3589 -0.9413 13 6 4.8553 -5.1676 0.0802 14 7 4.0181 -4.6752 0.9731 15 7 3.6168 -3.4566 0.9350 16 1 -0.4849 0.8401 -0.0004 17 1 3.8746 -0.6809 0.8904 18 1 3.8752 -0.6798 -0.8896 19 1 5.2398 -2.3645 -1.7509 20 1 6.0144 -4.7424 -1.6823 21 1 5.1714 -6.1982 0.1451 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259915537.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:57 Heat of formation + Delta-G solvation = 25.769579 kcal Electronic energy + Delta-G solvation = -8518.736855 eV Core-core repulsion = 6780.088674 eV Total energy + Delta-G solvation = -1738.648180 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 164.064 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.75226 -35.81959 -34.08165 -33.74636 -30.37072 -25.90006 -25.28133 -22.94172 -19.06166 -18.09106 -17.66373 -16.67106 -15.98237 -15.55626 -14.75994 -14.15692 -13.99453 -13.77731 -12.87173 -12.45447 -12.04505 -11.67499 -11.47886 -11.03560 -10.80923 -10.48950 -10.38187 -8.28470 -6.35016 0.03726 0.19634 1.38480 1.43016 1.54035 2.37424 2.76933 3.05344 3.33658 3.78903 3.91433 4.01925 4.27247 4.59830 4.84664 4.96096 5.06436 5.37345 5.46558 5.59509 6.24282 6.70011 7.26748 7.98826 8.89176 Molecular weight = 164.06amu Principal moments of inertia in cm(-1) A = 0.089401 B = 0.013831 C = 0.012752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 313.120325 B = 2023.950889 C = 2195.245001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.255 1.255 5 H -0.286 1.286 6 H -0.242 1.242 7 C -0.521 4.521 8 H 0.019 0.981 9 C 0.033 3.967 10 C 0.083 3.917 11 C -0.129 4.129 12 C -0.102 4.102 13 C 0.014 3.986 14 N -0.293 5.293 15 N -0.291 5.291 16 H 0.268 0.732 17 H 0.041 0.959 18 H 0.063 0.937 19 H 0.179 0.821 20 H 0.201 0.799 21 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.285 -4.233 -4.709 15.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.782 3.218 4 H -0.179 1.179 5 H -0.212 1.212 6 H -0.166 1.166 7 C -0.560 4.560 8 H 0.038 0.962 9 C -0.005 4.005 10 C -0.062 4.062 11 C -0.158 4.158 12 C -0.130 4.130 13 C -0.152 4.152 14 N -0.133 5.133 15 N -0.133 5.133 16 H 0.077 0.923 17 H 0.059 0.941 18 H 0.081 0.919 19 H 0.197 0.803 20 H 0.218 0.782 21 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 13.205 -4.411 -3.319 14.313 hybrid contribution 0.290 0.788 -1.011 1.314 sum 13.495 -3.623 -4.330 14.629 Atomic orbital electron populations 1.70088 1.08634 1.28400 1.52181 1.26090 0.95729 1.03781 0.93722 0.85528 0.79367 0.77172 0.79768 1.17913 1.21187 1.16578 1.21060 0.90683 0.93042 1.51186 0.96230 1.18618 0.94864 0.88055 0.98986 1.23242 0.92346 0.98622 0.92021 1.22750 0.95753 0.98564 0.98728 1.22917 0.98695 0.92717 0.98696 1.24966 0.94387 1.03654 0.92169 1.72922 1.10065 1.06224 1.24053 1.72910 1.19084 0.98225 1.23050 0.92306 0.94085 0.91876 0.80345 0.78212 0.77556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.24 13.96 21.45 0.30 -60.94 14 2 C 0.00 0.20 5.47 84.65 0.46 0.66 14 3 Si 0.96 43.28 27.47 68.60 1.88 45.16 14 4 H -0.25 -10.59 7.11 99.48 0.71 -9.88 14 5 H -0.29 -12.85 7.11 99.48 0.71 -12.15 14 6 H -0.24 -9.98 6.54 99.48 0.65 -9.33 14 7 C -0.52 -31.31 9.48 25.60 0.24 -31.06 14 8 H 0.02 1.35 7.93 -2.91 -0.02 1.32 14 9 C 0.03 1.59 4.46 29.10 0.13 1.72 14 10 C 0.08 3.59 6.20 42.63 0.26 3.85 14 11 C -0.13 -3.91 9.82 22.51 0.22 -3.69 14 12 C -0.10 -2.35 10.21 22.51 0.23 -2.12 14 13 C 0.01 0.38 11.31 84.77 0.96 1.34 14 14 N -0.29 -12.00 11.50 -57.25 -0.66 -12.65 14 15 N -0.29 -14.09 11.15 -47.63 -0.53 -14.62 14 16 H 0.27 15.91 8.31 -92.71 -0.77 15.14 14 17 H 0.04 1.95 7.20 -2.39 -0.02 1.93 14 18 H 0.06 2.59 7.35 -2.38 -0.02 2.57 14 19 H 0.18 4.01 8.00 -2.91 -0.02 3.99 14 20 H 0.20 2.25 8.06 -2.91 -0.02 2.22 14 21 H 0.21 3.60 8.06 -2.91 -0.02 3.57 14 Total: -1.00 -77.65 196.70 4.67 -72.98 By element: Atomic # 1 Polarization: -1.78 SS G_CDS: 1.17 Total: -0.62 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: 2.51 Total: -29.30 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -0.89 Total: -88.22 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.88 Total: 45.16 kcal Total: -77.65 4.67 -72.98 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259915537.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.745 kcal (2) G-P(sol) polarization free energy of solvation -77.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds