Wall clock time and date at job start Mon Mar 30 2020 01:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09002 * 110.31072 * 52.80971 * 10 9 7 12 12 C 1.54168 * 110.34980 * 175.00056 * 10 9 7 13 13 O 1.44292 * 104.94293 * 118.86083 * 12 10 9 14 14 C 1.44396 * 104.60798 * 23.64337 * 13 12 10 15 15 O 1.44296 * 110.34569 * 290.51574 * 10 9 7 16 16 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 17 17 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 18 18 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 19 19 H 1.08996 * 110.34725 * 237.73356 * 12 10 9 20 20 H 1.08999 * 110.34379 * 359.97438 * 12 10 9 21 21 H 1.09008 * 110.40316 * 79.45449 * 14 13 12 22 22 H 1.09005 * 110.40258 * 201.75017 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9605 -3.5519 0.8045 12 6 1.4989 -5.0059 0.1095 13 8 1.8252 -5.7219 -1.1000 14 6 3.0721 -5.1425 -1.5410 15 8 2.9316 -3.7298 -1.2778 16 1 -0.4850 0.8401 -0.0004 17 1 0.6242 -2.5609 0.8844 18 1 0.6244 -2.5529 -0.8956 19 1 1.8487 -5.5570 0.9823 20 1 0.4237 -4.8380 0.1725 21 1 3.9051 -5.5543 -0.9710 22 1 3.2176 -5.3197 -2.6067 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259921464.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:14 Heat of formation + Delta-G solvation = -101.154985 kcal Electronic energy + Delta-G solvation = -8767.064454 eV Core-core repulsion = 6901.078271 eV Total energy + Delta-G solvation = -1865.986183 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 158.073 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -39.57560 -34.48445 -33.14406 -30.81067 -26.90020 -24.44635 -23.11277 -20.54182 -16.82881 -16.06252 -15.69106 -15.21294 -14.68673 -14.28808 -12.79514 -12.48943 -12.02899 -11.58058 -11.38806 -11.15437 -10.61134 -10.49132 -9.96161 -9.47838 -9.08173 -8.98593 -8.37864 -6.00437 -4.01751 3.34423 3.39975 3.43774 4.22356 4.46942 4.68690 5.28360 5.33118 5.37405 5.53448 5.79123 5.95976 6.16925 6.49686 6.74030 7.29868 7.56995 7.80010 7.96429 8.37562 9.02279 9.61329 11.11225 Molecular weight = 158.07amu Principal moments of inertia in cm(-1) A = 0.106277 B = 0.014314 C = 0.013252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 263.398794 B = 1955.597545 C = 2112.420308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.022 3.978 10 C 0.055 3.945 11 H 0.071 0.929 12 C 0.018 3.982 13 O -0.394 6.394 14 C 0.195 3.805 15 O -0.365 6.365 16 H 0.261 0.739 17 H 0.033 0.967 18 H 0.029 0.971 19 H 0.062 0.938 20 H 0.097 0.903 21 H 0.051 0.949 22 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.113 -7.110 0.235 8.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.076 0.924 9 C -0.015 4.015 10 C -0.002 4.002 11 H 0.089 0.911 12 C -0.059 4.059 13 O -0.314 6.314 14 C 0.080 3.920 15 O -0.285 6.285 16 H 0.071 0.929 17 H 0.051 0.949 18 H 0.047 0.953 19 H 0.081 0.919 20 H 0.115 0.885 21 H 0.068 0.932 22 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.915 -6.978 0.008 8.001 hybrid contribution 0.540 0.864 0.182 1.035 sum 4.455 -6.114 0.190 7.567 Atomic orbital electron populations 1.69958 1.06059 1.26719 1.50983 1.25011 0.94880 0.99345 0.95305 0.86522 0.79737 0.83173 0.78143 1.20634 1.21263 1.19875 1.21138 0.93164 0.90539 1.50324 0.92389 1.19328 0.93096 0.90755 0.98316 1.23920 0.94897 0.96140 0.85263 0.91120 1.24241 1.02469 0.92208 0.86932 1.89136 1.40765 1.59908 1.41640 1.24838 0.86779 0.80182 1.00188 1.89373 1.77888 1.21865 1.39421 0.92939 0.94855 0.95260 0.91935 0.88517 0.93185 0.87481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.29 55.43 0.74 -26.45 14 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 14 3 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 14 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 14 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 14 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 14 7 C -0.51 -14.88 9.00 -34.44 -0.31 -15.19 14 8 H 0.06 1.66 7.74 -52.49 -0.41 1.26 14 9 C 0.02 0.58 4.51 -27.88 -0.13 0.45 14 10 C 0.05 1.19 3.48 -26.12 -0.09 1.10 14 11 H 0.07 1.45 8.14 -51.93 -0.42 1.03 14 12 C 0.02 0.33 7.55 37.77 0.29 0.61 14 13 O -0.39 -7.36 11.78 -59.42 -0.70 -8.06 14 14 C 0.19 3.34 8.52 101.05 0.86 4.20 14 15 O -0.37 -8.12 11.35 -59.42 -0.67 -8.79 14 16 H 0.26 7.44 8.31 -40.82 -0.34 7.10 14 17 H 0.03 0.88 8.14 -51.93 -0.42 0.46 14 18 H 0.03 0.83 8.14 -51.93 -0.42 0.41 14 19 H 0.06 0.94 8.14 -51.93 -0.42 0.52 14 20 H 0.10 1.73 7.71 -51.93 -0.40 1.33 14 21 H 0.05 0.73 8.14 -51.92 -0.42 0.31 14 22 H 0.11 1.56 8.14 -51.93 -0.42 1.14 14 LS Contribution 198.41 15.07 2.99 2.99 Total: -1.00 -31.56 198.41 -4.62 -36.19 By element: Atomic # 1 Polarization: -3.13 SS G_CDS: -2.48 Total: -5.61 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 0.52 Total: -7.31 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.74 Total: -26.45 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -1.37 Total: -16.85 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 2.99 Total: 2.99 kcal Total: -31.56 -4.62 -36.19 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259921464.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.969 kcal (2) G-P(sol) polarization free energy of solvation -31.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds