Wall clock time and date at job start Mon Mar 30 2020 01:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09002 * 110.31072 * 52.80971 * 10 9 7 12 12 C 1.54168 * 110.34980 * 175.00056 * 10 9 7 13 13 O 1.44292 * 104.94293 * 118.86083 * 12 10 9 14 14 C 1.44396 * 104.60798 * 23.64337 * 13 12 10 15 15 O 1.44296 * 110.34569 * 290.51574 * 10 9 7 16 16 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 17 17 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 18 18 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 19 19 H 1.08996 * 110.34725 * 237.73356 * 12 10 9 20 20 H 1.08999 * 110.34379 * 359.97438 * 12 10 9 21 21 H 1.09008 * 110.40316 * 79.45449 * 14 13 12 22 22 H 1.09005 * 110.40258 * 201.75017 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9605 -3.5519 0.8045 12 6 1.4989 -5.0059 0.1095 13 8 1.8252 -5.7219 -1.1000 14 6 3.0721 -5.1425 -1.5410 15 8 2.9316 -3.7298 -1.2778 16 1 -0.4850 0.8401 -0.0004 17 1 0.6242 -2.5609 0.8844 18 1 0.6244 -2.5529 -0.8956 19 1 1.8487 -5.5570 0.9823 20 1 0.4237 -4.8380 0.1725 21 1 3.9051 -5.5543 -0.9710 22 1 3.2176 -5.3197 -2.6067 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259921464.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:14 Heat of formation + Delta-G solvation = -123.904140 kcal Electronic energy + Delta-G solvation = -8768.050932 eV Core-core repulsion = 6901.078271 eV Total energy + Delta-G solvation = -1866.972661 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 158.073 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -41.09260 -36.11207 -35.18609 -32.69402 -28.77469 -25.90052 -25.02444 -22.31362 -18.76157 -17.63910 -17.43387 -16.77783 -16.49592 -15.94501 -14.44761 -14.36957 -13.70324 -13.43618 -13.14632 -13.06472 -12.54989 -12.32461 -11.85824 -11.29682 -10.89213 -10.62911 -10.59418 -8.22103 -6.32062 1.39787 1.41848 1.52815 2.40653 2.77665 3.10651 3.28241 3.77000 3.94341 4.13477 4.42741 4.58205 4.62298 4.89174 5.10373 5.33068 5.46704 5.74306 6.05781 6.22388 6.80304 7.35905 8.89951 Molecular weight = 158.07amu Principal moments of inertia in cm(-1) A = 0.106277 B = 0.014314 C = 0.013252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 263.398794 B = 1955.597545 C = 2112.420308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.968 3.032 4 H -0.276 1.276 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.536 4.536 8 H 0.056 0.944 9 C 0.024 3.976 10 C 0.057 3.943 11 H 0.084 0.916 12 C 0.025 3.975 13 O -0.405 6.405 14 C 0.189 3.811 15 O -0.401 6.401 16 H 0.265 0.735 17 H 0.023 0.977 18 H -0.007 1.007 19 H 0.102 0.898 20 H 0.091 0.909 21 H 0.085 0.915 22 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.359 -7.392 0.497 9.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.202 1.202 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.574 4.574 8 H 0.075 0.925 9 C -0.013 4.013 10 C 0.000 4.000 11 H 0.101 0.899 12 C -0.051 4.051 13 O -0.326 6.326 14 C 0.075 3.925 15 O -0.322 6.322 16 H 0.074 0.926 17 H 0.041 0.959 18 H 0.012 0.988 19 H 0.120 0.880 20 H 0.109 0.891 21 H 0.102 0.898 22 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.169 -7.282 0.271 8.934 hybrid contribution 0.146 0.903 0.065 0.917 sum 5.315 -6.379 0.336 8.310 Atomic orbital electron populations 1.70079 1.07698 1.27909 1.51662 1.25960 0.95824 1.03352 0.94682 0.85405 0.78712 0.78321 0.78345 1.20205 1.20350 1.18669 1.21525 0.93351 0.92056 1.50460 0.92542 1.19192 0.93637 0.92427 0.96033 1.23733 0.94442 0.96072 0.85773 0.89865 1.24215 1.01952 0.90707 0.88233 1.89117 1.41746 1.59779 1.41981 1.25294 0.87045 0.77746 1.02387 1.89316 1.78034 1.25293 1.39526 0.92637 0.95868 0.98837 0.87977 0.89062 0.89774 0.85195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.26 13.29 21.45 0.28 -56.98 14 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 14 3 Si 0.97 45.12 29.54 68.60 2.03 47.14 14 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 14 5 H -0.28 -12.49 7.11 99.48 0.71 -11.79 14 6 H -0.26 -11.66 7.11 99.48 0.71 -10.95 14 7 C -0.54 -31.32 9.00 25.60 0.23 -31.09 14 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 14 9 C 0.02 1.29 4.51 29.85 0.13 1.43 14 10 C 0.06 2.42 3.48 30.99 0.11 2.52 14 11 H 0.08 3.29 8.14 -2.39 -0.02 3.27 14 12 C 0.03 0.87 7.55 72.38 0.55 1.42 14 13 O -0.41 -14.25 11.78 -125.85 -1.48 -15.73 14 14 C 0.19 5.98 8.52 113.37 0.97 6.94 14 15 O -0.40 -17.40 11.35 -125.85 -1.43 -18.83 14 16 H 0.26 15.21 8.31 -92.70 -0.77 14.44 14 17 H 0.02 1.26 8.14 -2.38 -0.02 1.24 14 18 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 14 19 H 0.10 2.72 8.14 -2.39 -0.02 2.70 14 20 H 0.09 3.20 7.71 -2.39 -0.02 3.18 14 21 H 0.08 2.12 8.14 -2.38 -0.02 2.10 14 22 H 0.13 3.44 8.14 -2.38 -0.02 3.42 14 Total: -1.00 -67.31 198.41 3.04 -64.27 By element: Atomic # 1 Polarization: -2.73 SS G_CDS: 1.19 Total: -1.53 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 2.45 Total: -18.35 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: 0.28 Total: -56.98 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -2.91 Total: -34.55 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -67.31 3.04 -64.27 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259921464.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.637 kcal (2) G-P(sol) polarization free energy of solvation -67.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds