Wall clock time and date at job start Mon Mar 30 2020 01:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00369 * 2 1 4 4 H 1.48500 * 109.47192 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46730 * 299.99317 * 3 2 1 6 6 H 1.48494 * 109.47222 * 59.99199 * 3 2 1 7 7 C 1.37880 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99964 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00062 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47201 * 300.00104 * 9 7 2 11 11 O 1.42899 * 109.47339 * 179.97438 * 9 7 2 12 12 N 1.46300 * 113.99960 * 123.02542 * 11 9 7 13 13 C 1.53000 * 109.46937 * 59.99825 * 9 7 2 14 14 C 1.53007 * 117.49882 * 243.45071 * 13 9 7 15 15 C 1.53001 * 117.50026 * 174.79149 * 13 9 7 16 16 H 0.96998 * 119.99542 * 0.02562 * 1 2 3 17 17 H 1.00900 * 111.00291 * 64.77731 * 12 11 9 18 18 H 1.00901 * 110.99796 * 188.73799 * 12 11 9 19 19 H 1.09003 * 115.55414 * 29.11834 * 13 9 7 20 20 H 1.08997 * 117.49456 * 359.97438 * 14 13 9 21 21 H 1.08996 * 117.49824 * 145.02370 * 14 13 9 22 22 H 1.08997 * 117.50233 * 214.97996 * 15 13 9 23 23 H 1.09004 * 117.49553 * 359.97438 * 15 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3963 -1.2127 6 1 1.8905 2.3965 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 2.1795 -3.5854 0.0005 12 7 2.0125 -4.5110 1.1211 13 6 0.3719 -2.5804 -1.2490 14 6 -1.1434 -2.6379 -1.0443 15 6 -0.3839 -3.8873 -1.4974 16 1 -0.4849 0.8401 -0.0004 17 1 1.1222 -4.9831 1.0706 18 1 2.7720 -5.1742 1.1585 19 1 0.7418 -2.0396 -2.1202 20 1 -1.5137 -2.6182 -0.0193 21 1 -1.7702 -2.1354 -1.7809 22 1 -0.5115 -4.2063 -2.5318 23 1 -0.2544 -4.6895 -0.7707 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259943732.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:24 Heat of formation + Delta-G solvation = -0.451756 kcal Electronic energy + Delta-G solvation = -8767.175221 eV Core-core repulsion = 7003.274520 eV Total energy + Delta-G solvation = -1763.900701 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 157.084 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -38.85339 -36.17455 -34.60526 -30.97851 -28.48434 -24.85633 -23.01367 -21.24458 -18.78653 -17.38883 -16.72331 -16.41096 -16.12798 -15.24159 -14.38780 -13.79222 -13.02722 -12.85988 -12.59557 -12.26138 -12.11232 -11.87461 -11.37608 -10.88600 -10.47211 -10.39156 -9.63800 -8.12796 -6.26030 1.41726 1.42819 1.55421 2.17262 2.49670 3.13746 3.31792 4.13682 4.35543 4.42246 4.67869 4.80494 5.05793 5.18031 5.38111 5.48193 5.61717 5.72080 6.19296 6.30615 6.48559 6.89995 7.42163 8.92624 Molecular weight = 157.08amu Principal moments of inertia in cm(-1) A = 0.058246 B = 0.021233 C = 0.016826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.601698 B = 1318.403176 C = 1663.662400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.023 3.977 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.554 4.554 8 H 0.046 0.954 9 C 0.250 3.750 10 H 0.013 0.987 11 O -0.263 6.263 12 N -0.685 5.685 13 C -0.133 4.133 14 C -0.137 4.137 15 C -0.181 4.181 16 H 0.264 0.736 17 H 0.341 0.659 18 H 0.367 0.633 19 H 0.065 0.935 20 H 0.073 0.927 21 H 0.084 0.916 22 H 0.100 0.900 23 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.780 -5.055 -1.025 5.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.178 4.178 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.593 4.593 8 H 0.065 0.935 9 C 0.192 3.808 10 H 0.030 0.970 11 O -0.278 6.278 12 N -0.254 5.254 13 C -0.153 4.153 14 C -0.175 4.175 15 C -0.218 4.218 16 H 0.073 0.927 17 H 0.152 0.848 18 H 0.181 0.819 19 H 0.084 0.916 20 H 0.092 0.908 21 H 0.102 0.898 22 H 0.119 0.881 23 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.728 -4.324 -0.700 4.441 hybrid contribution 0.132 0.188 -0.564 0.609 sum -0.596 -4.136 -1.263 4.365 Atomic orbital electron populations 1.70116 1.06620 1.27366 1.49292 1.25636 0.95935 1.01952 0.94288 0.85450 0.78736 0.79170 0.77887 1.19824 1.20114 1.20155 1.21557 0.93240 0.91624 1.52838 0.93523 1.19097 0.86895 0.83194 0.91568 0.96959 1.90514 1.57732 1.37451 1.42054 1.64140 1.08362 1.22511 1.30379 1.22461 0.94108 0.98923 0.99817 1.22441 0.94244 1.00020 1.00747 1.22991 1.05600 0.91297 1.01877 0.92739 0.84842 0.81911 0.91644 0.90800 0.89775 0.88146 0.89437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.85 11.79 21.45 0.25 -50.59 14 2 C 0.02 1.29 5.30 84.66 0.45 1.74 14 3 Si 0.96 44.50 29.54 68.60 2.03 46.53 14 4 H -0.27 -12.60 7.11 99.48 0.71 -11.89 14 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 14 6 H -0.28 -12.35 7.11 99.48 0.71 -11.64 14 7 C -0.55 -32.59 8.84 25.60 0.23 -32.36 14 8 H 0.05 2.81 7.81 -2.91 -0.02 2.79 14 9 C 0.25 13.38 2.75 29.85 0.08 13.47 14 10 H 0.01 0.73 7.61 -2.39 -0.02 0.71 14 11 O -0.26 -12.85 11.40 -50.16 -0.57 -13.42 14 12 N -0.69 -25.87 10.58 37.02 0.39 -25.48 14 13 C -0.13 -6.50 4.39 -10.79 -0.05 -6.54 14 14 C -0.14 -5.91 9.49 30.62 0.29 -5.62 14 15 C -0.18 -6.89 10.06 30.62 0.31 -6.58 14 16 H 0.26 14.11 8.31 -92.71 -0.77 13.34 14 17 H 0.34 11.11 8.94 -89.69 -0.80 10.31 14 18 H 0.37 11.03 9.25 -89.69 -0.83 10.20 14 19 H 0.07 3.44 8.07 -2.39 -0.02 3.42 14 20 H 0.07 3.32 8.03 -2.39 -0.02 3.30 14 21 H 0.08 3.43 8.14 -2.39 -0.02 3.41 14 22 H 0.10 3.32 8.14 -2.39 -0.02 3.31 14 23 H 0.09 3.08 7.83 -2.38 -0.02 3.06 14 Total: -1.00 -63.12 207.62 2.99 -60.13 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -0.42 Total: 18.73 kcal Atomic # 6 Polarization: -37.21 SS G_CDS: 1.31 Total: -35.90 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: 0.64 Total: -76.07 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.57 Total: -13.42 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -63.12 2.99 -60.13 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259943732.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.681 kcal (2) G-P(sol) polarization free energy of solvation -63.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds