Wall clock time and date at job start Mon Mar 30 2020 01:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99844 * 2 1 4 4 C 1.50705 * 112.93585 * 289.60496 * 3 2 1 5 5 H 1.07998 * 119.99501 * 118.73006 * 4 3 2 6 6 C 1.37868 * 119.99970 * 298.73233 * 4 3 2 7 7 N 1.31511 * 120.00476 * 5.60449 * 6 4 3 8 8 Si 1.86805 * 119.99866 * 185.60819 * 6 4 3 9 9 H 1.48502 * 109.46996 * 60.00097 * 8 6 4 10 10 H 1.48502 * 109.47105 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47261 * 299.99810 * 8 6 4 12 12 C 1.53936 * 113.73579 * 157.90346 * 3 2 1 13 13 N 1.47955 * 86.18165 * 221.91798 * 12 3 2 14 14 C 1.47964 * 90.76455 * 24.68636 * 13 12 3 15 15 H 1.09001 * 109.47139 * 295.42152 * 1 2 3 16 16 H 1.09004 * 109.47207 * 175.42318 * 1 2 3 17 17 H 1.08996 * 109.47286 * 55.42139 * 1 2 3 18 18 H 0.97001 * 120.00639 * 179.97438 * 7 6 4 19 19 H 1.09001 * 113.75543 * 336.23463 * 12 3 2 20 20 H 1.08992 * 113.76441 * 107.59869 * 12 3 2 21 21 H 1.00905 * 111.00509 * 137.57780 * 13 12 3 22 22 H 1.08997 * 113.75975 * 220.99400 * 14 13 12 23 23 H 1.08999 * 113.75491 * 89.62897 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.8236 2.0314 -1.3074 5 1 1.2731 2.9600 -1.3356 6 6 2.3558 1.5099 -2.4675 7 7 2.9300 0.3269 -2.4539 8 14 2.2612 2.4839 -4.0587 9 1 2.9690 3.7784 -3.8895 10 1 2.9016 1.7094 -5.1520 11 1 0.8385 2.7385 -4.3995 12 6 3.4550 1.3405 0.5301 13 7 3.0583 2.5744 1.2436 14 6 1.6415 2.1479 1.2345 15 1 -0.3633 0.4412 0.9282 16 1 -0.3634 -1.0244 -0.0820 17 1 -0.3633 0.5832 -0.8461 18 1 3.3041 -0.0402 -3.2701 19 1 3.7001 0.5099 1.1920 20 1 4.2035 1.5030 -0.2453 21 1 3.4271 2.5835 2.1828 22 1 0.9411 2.9555 1.0218 23 1 1.3563 1.5535 2.1025 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260217493.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:01 Heat of formation + Delta-G solvation = -33.551703 kcal Electronic energy + Delta-G solvation = -9026.667270 eV Core-core repulsion = 7261.331247 eV Total energy + Delta-G solvation = -1765.336023 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 157.084 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -40.41098 -36.61322 -34.39086 -28.94229 -27.51686 -26.44960 -25.29210 -20.63064 -18.73079 -17.77256 -16.74040 -15.79602 -15.68216 -14.80498 -14.57204 -13.83886 -13.68458 -13.43021 -12.76566 -12.55076 -12.28929 -11.91735 -11.63878 -10.76246 -10.61709 -9.88502 -9.73814 -8.09171 -6.29957 1.41452 1.44016 1.51294 2.41804 3.06605 3.43727 3.55189 4.21151 4.43344 4.53536 4.70717 4.79530 4.89403 5.05332 5.17305 5.28424 5.42465 5.68327 6.13892 6.58554 6.75508 7.04751 7.45566 8.94999 Molecular weight = 157.08amu Principal moments of inertia in cm(-1) A = 0.058519 B = 0.024104 C = 0.020974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.358240 B = 1161.367854 C = 1334.667702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.405 6.405 3 C 0.207 3.793 4 C -0.540 4.540 5 H 0.052 0.948 6 C 0.032 3.968 7 N -0.890 5.890 8 Si 0.952 3.048 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.270 1.270 12 C 0.031 3.969 13 N -0.624 5.624 14 C -0.019 4.019 15 H 0.038 0.962 16 H 0.078 0.922 17 H 0.022 0.978 18 H 0.261 0.739 19 H 0.054 0.946 20 H 0.060 0.940 21 H 0.320 0.680 22 H 0.076 0.924 23 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.493 1.348 4.149 5.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.324 6.324 3 C 0.169 3.831 4 C -0.578 4.578 5 H 0.071 0.929 6 C -0.171 4.171 7 N -0.526 5.526 8 Si 0.778 3.222 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.195 1.195 12 C -0.099 4.099 13 N -0.250 5.250 14 C -0.149 4.149 15 H 0.057 0.943 16 H 0.096 0.904 17 H 0.041 0.959 18 H 0.070 0.930 19 H 0.072 0.928 20 H 0.079 0.921 21 H 0.133 0.867 22 H 0.094 0.906 23 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.211 1.693 3.492 4.466 hybrid contribution -0.157 -0.212 -0.253 0.366 sum -2.368 1.481 3.239 4.277 Atomic orbital electron populations 1.22354 0.82524 1.01054 0.98893 1.87825 1.19063 1.30819 1.94706 1.20903 0.90091 0.80329 0.91815 1.21150 1.36523 1.07475 0.92656 0.92935 1.25742 0.94163 0.95260 1.01961 1.70190 1.37197 1.16600 1.28627 0.85722 0.78574 0.78878 0.79072 1.19765 1.20728 1.19491 1.23569 0.99190 0.90467 0.96704 1.66692 1.04578 1.34997 1.18744 1.24397 0.92413 0.99021 0.99072 0.94317 0.90383 0.95947 0.93027 0.92782 0.92139 0.86670 0.90606 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.05 10.62 113.37 1.20 3.25 14 2 O -0.41 -21.00 10.17 -148.98 -1.51 -22.51 14 3 C 0.21 10.56 0.66 -10.89 -0.01 10.56 14 4 C -0.54 -30.23 7.70 25.60 0.20 -30.03 14 5 H 0.05 2.94 7.81 -2.91 -0.02 2.91 14 6 C 0.03 1.77 5.38 84.65 0.46 2.23 14 7 N -0.89 -52.28 12.82 21.44 0.28 -52.01 14 8 Si 0.95 44.05 29.54 68.60 2.03 46.08 14 9 H -0.27 -12.41 7.11 99.48 0.71 -11.70 14 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 14 11 H -0.27 -12.07 7.11 99.48 0.71 -11.37 14 12 C 0.03 1.49 8.16 86.41 0.71 2.20 14 13 N -0.62 -26.27 8.45 -527.27 -4.45 -30.72 14 14 C -0.02 -0.78 7.31 86.40 0.63 -0.15 14 15 H 0.04 1.40 7.54 -2.39 -0.02 1.39 14 16 H 0.08 2.88 8.14 -2.38 -0.02 2.86 14 17 H 0.02 1.00 7.55 -2.39 -0.02 0.98 14 18 H 0.26 14.58 8.31 -92.71 -0.77 13.81 14 19 H 0.05 2.42 8.14 -2.39 -0.02 2.40 14 20 H 0.06 3.23 8.07 -2.39 -0.02 3.21 14 21 H 0.32 10.99 8.91 -89.69 -0.80 10.19 14 22 H 0.08 3.15 8.08 -2.39 -0.02 3.13 14 23 H 0.07 2.58 8.09 -2.39 -0.02 2.56 14 Total: -1.00 -62.66 202.78 -0.09 -62.75 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 0.40 Total: 8.36 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 3.19 Total: -11.95 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -4.18 Total: -82.73 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -1.51 Total: -22.51 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -62.66 -0.09 -62.75 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260217493.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.198 kcal (2) G-P(sol) polarization free energy of solvation -62.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds